Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1134 ATGAGTTTTAATTCAAGATATTTACCCTTTATCGAATACGAAACTTTATTACGTGAGATGTGTCGATGTAATGAATCGTCTTTTGTTCGTGATGGGTGAAAATCCAGGAATCAAAATTCAGCTTCCCTTGTATTATTGCCGGAAGTTACTCTAAATTGTCGACCAAGTCTTCGTTCGGTCTTTTCTTGCGTGGCGGCTGATTTTGATCCTCCAATGGGAACTCCCGAATTCCCAGATCTTGGAAAGCATTGCGCTGTTGATGATTGCAAGTTGATTGATTTCTTGCCCTTCACATGCGATCGTTGCAATCAAGTATATTGTTTGGAGCACAGAGGTTATGCTAAACATCAGTGTCAGAAAGCGGATAGACTCGATGTCACTGTTGTCATATGTCCACTTTGTGCAAAAGGAGTTCGCCTAATTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTAAACACTGAATGTGACCCATCAAATTATGAGAAAGCCATGAAGAAGAAAAAATGTCCTGCCCCTGGATGCAGAGAGATCTTGGTGTTCTCAAACACAATCAAATGCAGGGATTGCTTGGTAGATCATTGTCTAAAGCATCGTTTTGGCCCTGATCACAAGTGTCCAGGGCCCAAAACTTTGGAAAGCAGCTTTTCATTTATGAATCTCTTAAGCAGAAGTAGAAAAGAAGAGTCAAAGCCAAATCCATCTCCACCTACATCCTCATCAAAATGGGCTTCGGGCTTCCGCAATCTTCGAGCTTCAGCTGAAGCCAGCATGTCAAAATTGGGTAATGAAATTAACCAAGCTTGGCAAACAGCAAAGGATGGGGTGGGACAGAGCAGTGGTAGGGGTAATGAAAATGGGCAAGTGGAGATGGAGCAATGTCCTCAGTGTAATGCAAAGTTTTCGTCTGTCACTTCTTTGGTGGATCATGTACAGAAAGTTCATGAAAGAAGCAGCAACCCATCCCGGGTGGCGAAGGTGACCATTGATGTCTGTCCCAAATGTAGTAGAGGATTTCGAGATCCAGTGGCTCTTGTGGAGCATGTTGAGAGGGATCACGGTGCGTGCGATTTGAACATGGCAAGGGGCAAGTATATCATTTCTGCTCTAATAGCATCATTTGGAGTTGCATGGATCTGTGACACATCTATTTCTGACTTAAAGATTTTTGGAGGCACTACCCCATCAACAGTTTCAAATAAGGAGTGGTTTGATGAGACTGACAAAAAATTTCAGGCATGGCCTCGTACTGCTGGTCCTCCTGTGGTTATGAATCCCATACGTCGCCAAAATTATATTGTCAAGTCCCGCTCTGAGTCTTGA 1329 0.4312 MSFNSRYLPFIEYETLLREMCRCNESSFVRDGXKSRNQNSASLVLLPEVTLNCRPSLRSVFSCVAADFDPPMGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVYCLEHRGYAKHQCQKADRLDVTVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYEKAMKKKKCPAPGCREILVFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKTLESSFSFMNLLSRSRKEESKPNPSPPTSSSKWASGFRNLRASAEASMSKLGNEINQAWQTAKDGVGQSSGRGNENGQVEMEQCPQCNAKFSSVTSLVDHVQKVHERSSNPSRVAKVTIDVCPKCSRGFRDPVALVEHVERDHGACDLNMARGKYIISALIASFGVAWICDTSISDLKIFGGTTPSTVSNKEWFDETDKKFQAWPRTAGPPVVMNPIRRQNYIVKSRSES 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1134 442 Gene3D - 151 222 IPR035896 -
Acco02g1134 442 Gene3D Classic Zinc Finger 264 359 - -
Acco02g1134 442 ProSiteProfiles Zinc finger AN1-type profile. 78 126 IPR000058 GO:0008270
Acco02g1134 442 ProSiteProfiles Zinc finger AN1-type profile. 166 216 IPR000058 GO:0008270
Acco02g1134 442 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 76 320 - -
Acco02g1134 442 SUPERFAMILY AN1-like Zinc finger 75 121 IPR035896 -
Acco02g1134 442 SMART AN1_Zf_4 172 213 IPR000058 GO:0008270
Acco02g1134 442 SMART AN1_Zf_4 84 123 IPR000058 GO:0008270
Acco02g1134 442 ProSitePatterns Zinc finger C2H2 type domain signature. 334 355 IPR013087 -
Acco02g1134 442 ProSitePatterns Zinc finger C2H2 type domain signature. 296 317 IPR013087 -
Acco02g1134 442 SUPERFAMILY AN1-like Zinc finger 128 214 IPR035896 -
Acco02g1134 442 Pfam Protein of unknown function (DUF1138) 365 437 IPR009515 -
Acco02g1134 442 Gene3D - 72 129 IPR035896 -
Acco02g1134 442 MobiDBLite consensus disorder prediction 267 292 - -
Acco02g1134 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 322 IPR013087 -
Acco02g1134 442 SMART c2h2final6 332 355 IPR013087 -
Acco02g1134 442 SMART c2h2final6 294 317 IPR013087 -
Acco02g1134 442 MobiDBLite consensus disorder prediction 234 249 - -
Acco02g1134 442 MobiDBLite consensus disorder prediction 225 249 - -
Acco02g1134 442 FunFam AN1-type zinc finger protein 2B isoform X1 74 135 - -
Acco02g1134 442 Pfam C2H2-type zinc finger 295 317 - -
Acco02g1134 442 Pfam AN1-like Zinc finger 84 122 IPR000058 GO:0008270
Acco02g1134 442 Pfam AN1-like Zinc finger 172 211 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1134 Acco-ChrAcco02 8278053 8284578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1134 72 355 C2H2 Transcription Factor Family AT2G41835 66.090 3.86e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g1134 DUF1138 3e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1134 02 8278053 8284578 Acco02g1134 02 8278053 8284578 ECH