Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1116 ATGGCTTCCTCTTCCTCTGACCCTAGCAAGTCTGAAGTTGGCTGCTGCGGCGGGGGCGGTAGCGCAGAGGGTTCGGATGCAGCGATGGCAAATGAGAAGCTCTTACTCTACAGGGGATTGAAGAAAGCGAAGAAAGAAAGGGGGTGTACAGCTAAAGAGCGCATCAGCAAGATGCCTCCTTGTGCTGCGGGGAAGCGCAGCTCCATATATCGTGGTGTTACCAGGCATAGATGGACTGGTCGTTATGAGGCCCATCTTTGGGATAAAAGTACATGGAACCAGAATCAGAATAAAAAGGGAAAACAAGGTGCATATGATGACGAGGAAGCTGCAGCTAGAGCTTATGACCTTGCTGCTCTGAAGTACTGGGGTCCGGGGACTCTAATCAACTTTCCCGTGACTGATTATACAAGAGATCTTGAAGAAATGCAAAATGTTACAAGAGAGGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGAATCTCTAAATATCGTGGACTCTCCAGCCGATGGGAGCCATCATATGGTAGAATGGCTGGATCTGATTACTTCAACAGTATACATTATGGGACAGGTGATGATTCAGCAGCAGAAAGTGAATATGTTGGTGGTTTCTGCATAGAACGAAAGATTGATTTGACAAATTACATCAAGTGGTGGGGATCCAGTAAAAATCGTCAAACTGAGGCTGGAACAAAATCATCAGAAGAAAAAAAACAAGGATTTGCGGGAGATATTTGTGCTGATCTCAAAACGCTGGAGCAGGAACTCCAACCCATGGAACCATACCAGATGCCACGGTTAGGCTTGCCCCATGATAGGAAAAAGCATAAAAGTTCTGCTGTCTCTGCCTTAACTATTTTATCACGGTCAGCAGCCTACAAGAGCCTGCAAGAGAAAGCATCAAAGACACAGGAAATTTACACTGATAATGATGAGGATGAGAACAAGAATACCATTAATAAGTTGGACCATGGCAAGGCACTTGAGAGATCACCAAATCTTAATGGCGTGGATGAAAGGTTTGACATTGCAATGGGAATGAGCGGGGCATTGTCTATTCAAAGAAATGTTTACCCCTTGACTTCATTCTTGTCTGCACCACTTTTGACAGCCTATAATACCGCCGATCCCATGGTAGATCCTGTTCTCTGGACGTCTCTTATTCCTATGCTTCCTGCTGGCCTTTCTCGAACAGCCGAGGTCACCAAGACCGAGAGCAGTTCAACTTACACCATATTTCAGCCAGAGGAGTGA 1272 0.4568 MASSSSDPSKSEVGCCGGGGSAEGSDAAMANEKLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVTREEYLASLRRKSSGFSRGISKYRGLSSRWEPSYGRMAGSDYFNSIHYGTGDDSAAESEYVGGFCIERKIDLTNYIKWWGSSKNRQTEAGTKSSEEKKQGFAGDICADLKTLEQELQPMEPYQMPRLGLPHDRKKHKSSAVSALTILSRSAAYKSLQEKASKTQEIYTDNDEDENKNTINKLDHGKALERSPNLNGVDERFDIAMGMSGALSIQRNVYPLTSFLSAPLLTAYNTADPMVDPVLWTSLIPMLPAGLSRTAEVTKTESSSTYTIFQPEE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1116 423 MobiDBLite consensus disorder prediction 309 339 - -
Acco02g1116 423 FunFam AP2-like ethylene-responsive transcription factor 68 134 - -
Acco02g1116 423 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 31 273 - -
Acco02g1116 423 SUPERFAMILY DNA-binding domain 68 133 IPR016177 GO:0003677
Acco02g1116 423 SMART rav1_2 69 138 IPR001471 GO:0003700|GO:0006355
Acco02g1116 423 Gene3D AP2/ERF domain 69 134 IPR036955 GO:0003700|GO:0006355
Acco02g1116 423 MobiDBLite consensus disorder prediction 310 339 - -
Acco02g1116 423 ProSiteProfiles AP2/ERF domain profile. 69 132 IPR001471 GO:0003700|GO:0006355
Acco02g1116 423 Pfam AP2 domain 69 124 IPR001471 GO:0003700|GO:0006355
Acco02g1116 423 MobiDBLite consensus disorder prediction 1 25 - -
Acco02g1116 423 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Acco02g1116 423 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1116 Acco-ChrAcco02 8109213 8112548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1116 30 407 AP2-EREBP Transcription Factor Family AT2G41710 65.206 4.00e-163 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco02g1116 AP2 2.1e-09 CL0081