Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1105 ATGGGGAGAGGGAAAATTGAAATTAAGAAGATAGAGAATTTGAATAACAGGCAGGTCACCTTCTCAAAGCGACGTAATGGGCTGATCAAGAAGGCCAAGGAGTTGTCTGTTCTGTGTGATGCAGAGGTTGCTGTCATCATTTTCTCCAGCACCGGCAAGCGTTATGAGTTCTCTAACACAAGCATGGAGCACACTCTTTCAAGGTACACCAAATGCGTGGAATTGGCCTCTACAGAGCAACCTCCAGCTGAGGAGACTGGGCCTGATACAAACCTTCTAAAGGATGAAGTGAGAAAGCTTCGTTTAGGATCCTTAAGAATGATGGGGAAGGAGCTAGAAGGGTTGAAATTTAAAGAGCTGCAGAACTTAGAAAATCAACTGAGTGAAGGGATACTATCTGTTAAAGAAAAGAAGGAAAAAATACTGGTTGATCAACTTAGAAGGTCCAGATTGCAGGAGCAACAAGCCGTGCTGGAGAATGAAGCTCTGCGCAAACAAATAGACGAGATGCAGAATAAAACAAAGACAAGACACTTTGTTTATTTGAATAGCTTGGAGAGCAGATTCTCCAGCCCCATTTTGCATTGTGCCTCCCATGAAAGACAGGACCTTTCTGACACTTCCTTGCAGTTAGGGTTGTCAACAGAATTTGGTCGCGAGAGTAAATCACTGAAGGCAGAACCCTGCAACGCCTCTGCATCGCAAAACACTCCTTAG 717 0.4421 MGRGKIEIKKIENLNNRQVTFSKRRNGLIKKAKELSVLCDAEVAVIIFSSTGKRYEFSNTSMEHTLSRYTKCVELASTEQPPAEETGPDTNLLKDEVRKLRLGSLRMMGKELEGLKFKELQNLENQLSEGILSVKEKKEKILVDQLRRSRLQEQQAVLENEALRKQIDEMQNKTKTRHFVYLNSLESRFSSPILHCASHERQDLSDTSLQLGLSTEFGRESKSLKAEPCNASASQNTP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1105 238 Coils Coil 153 173 - -
Acco02g1105 238 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Acco02g1105 238 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Acco02g1105 238 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco02g1105 238 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Acco02g1105 238 Coils Coil 120 140 - -
Acco02g1105 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco02g1105 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco02g1105 238 Pfam K-box region 89 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco02g1105 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco02g1105 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco02g1105 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco02g1105 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Acco02g1105 238 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Acco02g1105 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1105 Acco-ChrAcco02 8013353 8015765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1105 1 237 MADS-box Gene Family AT5G13790 46.311 1.11e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco02g1105 K-box 8e-15 No_clan