Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1097 ATGGATCATAGAAGGCAATCCAATGACTCGCTCTCGTACTCTAGTCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAAGAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGAGCAATCGCAATTCACAGCAATGGGAGTATGCGTGGAAGGGACGTAAAATTGCCGAAGAAGAGGAAGTGGCATCAAAACAGTGACGACGAGGACAAGGGTAATTTTTCTGGAACGCACATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATTCATAAATACAAGAGGAGGTATAAAGATACCTCATCTAGTCCTGCCCAAAATCGTGTTAGTGCTCAACTTCTTAAAAGCAACATAGGTTCGAAAGCGTCGAAGTTAGTGAATGAGCAGCGAGGAGGAATACATGCTCTGGAGACTACATCTGAGTGGCCTAATGATATTAATCCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACAGCAATATGGATCTGATAGAACCATCTACGAACCAGCTTCTTTAGGTATTGGAGATGGCGTTACTTACAAAATTCCTCCTACTTATGATAAGTTAGCAGCAATGCTGAACCTTCCAAGTTTCTTGGATATCCGAGTTGAGGAGTTTTACTTAAAAGGAACCTTGGATTTGGGATCCTTGGCTGAAATGATGACTTCTGATAAGAGGGTTGGGACTAGGAACCGAGTAGGCATGGGTGAAACCTTACCTCAATATGATTCTCTTCAGGCACGATTGAAGGCCATATCAGCTTCTAATTCACCTCATCAATTTAGTCTGAAAGTATCTGATGTTGGTCTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAAAGGTCTATTTTGTCTGAGGGTGGTGTTTTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACACATATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAGATGGAAAGAATTGGAAAAGTCTGGGTAAATATTGTAAGAAGAGACATACCTAAGCATCATAGGTTTTTTACTGGTTTCCATCGAAAGCAACTTGTCGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTTAGAATGAAAGTGAGTAGATCACTTAAATTCATGAGGAGCGCACCCATTCGCACCCGAAAACTAGCTAGAGATGTCTTGCTGTTCTGGAAACGAGCAGATAAGGAGATGGCAGAATTGAGGAGAAAAGAGGAGAAAGAAGCTGCAGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGCTATACAGTCACTTTATGCAGAACAAGTCGAACCTACTGTCTTCTGACGCTTTACCTACAGTAGATGAAAAAGCAGATGATCAAGATGCAGAACTTGGCTCTTCAGATGCTGGGCCTAGTGAGGAGGAAGATCCTGAAGAGACTGAGCTGAAAAAGGAAGCTTTGAAGGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACAAGTGCTTTTGATAGTGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCATCAACAGTTCGGACACCAGAAATGTTTAGAGGCTCCCTTAAAGAATATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGCCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGTTTTTTTAGCCCACTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGATTGTTGCACCTGCATCAGTCTTGAACAATTGGAATGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTACTGGGGTGGGCTTCATGAGCGGACAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCAAAATTCCACATTCTCATTACAAGCTACCAGCTACTAGTATCTGATGAGAAGTTTTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATTAAAAGTTCAAACAGTATAAGATGGAAGACACTTCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAACAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCATTCTATTATAAAGCCTTTCATGCTGCGACGGGTTAAAAAAGATGTAATATCCGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAGATATCTCTTGCTGAGTTGTTTGATCGTAATCGTGGGCAGTTCAACGATAAGAGAATTCTTAATTTAATGAATATTGTAATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGTGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATGCCCTTCTGCCTCCTCCATTTGGGGAATTGGAGGATGTGTACTATTCTGGGGGTCACAATCCAATATCATACAAGGTGCCAAAACTTGTCTTTCGAGAAATCATGCGAGGTTCTAAATTGCTCAATTCGACAATTGCTCATGGTGCGAGCAGAGAATTTTTACAAAGGCATTTTAATATTTATAGCCCGGAGAATATTTTTCAATCTATCTTCTCTGAAGGAAATAAATCGAATGCTTCATTTATTAAAAGTGGAACTTTTGGTTTTACCCATTTGATGGATTTCTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATGGTGAGATGGGAACAGAAATTTATCAATGAAGTTGTGGACTTCACTACGGAAACTATGGATAATGATCCTGAATACAGTTACCTTGAAAGAGGAAAAGTGAGGGCTGTTACACGAATGCTATTGGTGCCAACAAAATCTGAGACAGAGATTTTTCAAAGAAGATTTGCTACTGGCCCCAGTCATGCCCCTTTTGAGGCATTGGTTGTCCCATATCAAGATAGGATTATATCCAATGCAAGGCTTATTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCTTGGGTTAAGAGATTGCTTGTGGGATTTGCACGGACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCTAATCATTTAATTCAAGATATTGATTCTGAACTACCAGTTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTCGGTTCTTCTCCCCCTATGCAAAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGACATATTATTAAAACGTTTGCGGGCTGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTACATGAACTATAGAAAATATAGATATTTTAGACTTGATGGATCGTCGTCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAACAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTACGAGAATGATTGGAATCCCACATTGGATCAGCAGGCAATGGATAGAGCTCATCGGTTGGGTCAAACAAAAGATGTCACTGTTTATAGACTTATATGTAAAGAGACAGTTGAAGAGAAAATTCTTCTAAGAGCAAGTCAAAAAAGCACTGTACAGAACCTTGTCATGACCGGTGGTTCTACTGATGATGTTATAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTGCAGTTGGAGCAGAAATTCAAGGAAATTCCTCTTCAGGTAAAGGATAAGCAGAAGAGGAAACAGACTGTGAAGGGTATACGGGTTAATGAAGATGGTGATGCGTCCCTGGAAGATCTAACAAATTCTGGAGCACAGGGCCCAGATAATGATACTTCTCTTGACCCAGAGGGATCAAAGCCAAGTAATAAAAAGAGAAAAGCTGCCTCTGACAAGCAAACCGCATCAAGGGCAAGGAATTTTCAAAAGATGAATGAGTTAAATAGTAGTTCAATGCCGGAGTACGAGGTGTATGATGCTACTCAAAATACTGATCCAGTGGTTCAGAAACCCAAAAGACCAAAGAAGGCGAAGAAAGTTGGGAACGAGTTTGACGACTCTCCTGCTGGCACAGTGAATATATTCCCAGAGCAGACCCGATAG 4560 0.4125 MDHRRQSNDSLSYSSLFNLESLMNFQLPQEDDDFDYYGNSSQDESRDSQGGAIAIHSNGSMRGRDVKLPKKRKWHQNSDDEDKGNFSGTHMTEERYRSMLGEHIHKYKRRYKDTSSSPAQNRVSAQLLKSNIGSKASKLVNEQRGGIHALETTSEWPNDINPQKPVNYRDAEFRQQYGSDRTIYEPASLGIGDGVTYKIPPTYDKLAAMLNLPSFLDIRVEEFYLKGTLDLGSLAEMMTSDKRVGTRNRVGMGETLPQYDSLQARLKAISASNSPHQFSLKVSDVGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPSLIEKEEMERIGKVWVNIVRRDIPKHHRFFTGFHRKQLVDAKRFSENCQREVRMKVSRSLKFMRSAPIRTRKLARDVLLFWKRADKEMAELRRKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPTVDEKADDQDAELGSSDAGPSEEEDPEETELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKFFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVISELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDRNRGQFNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNALLPPPFGELEDVYYSGGHNPISYKVPKLVFREIMRGSKLLNSTIAHGASREFLQRHFNIYSPENIFQSIFSEGNKSNASFIKSGTFGFTHLMDFSPQEVMFSATGSFMEQVLFSMVRWEQKFINEVVDFTTETMDNDPEYSYLERGKVRAVTRMLLVPTKSETEIFQRRFATGPSHAPFEALVVPYQDRIISNARLIHSAYTYIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPNHLIQDIDSELPVAQPALQLTYKIFGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSTDDVIAPEDVVSLLLDDVQLEQKFKEIPLQVKDKQKRKQTVKGIRVNEDGDASLEDLTNSGAQGPDNDTSLDPEGSKPSNKKRKAASDKQTASRARNFQKMNELNSSSMPEYEVYDATQNTDPVVQKPKRPKKAKKVGNEFDDSPAGTVNIFPEQTR 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1097 1519 SMART helicmild6 1240 1323 IPR001650 -
Acco02g1097 1519 CDD SF2_C_SNF 1202 1334 - -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 491 519 - -
Acco02g1097 1519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1214 1397 IPR001650 -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 1397 1414 - -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 41 55 - -
Acco02g1097 1519 FunFam DNA helicase INO80-like protein 1182 1433 - -
Acco02g1097 1519 SMART ultradead3 586 781 IPR014001 -
Acco02g1097 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Acco02g1097 1519 Gene3D - 828 899 IPR027417 -
Acco02g1097 1519 FunFam Putative DNA helicase INO80 562 840 - -
Acco02g1097 1519 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Acco02g1097 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1362 IPR027417 -
Acco02g1097 1519 Gene3D - 586 827 IPR038718 -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 1437 1452 - -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 1415 1436 - -
Acco02g1097 1519 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Acco02g1097 1519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Acco02g1097 1519 Pfam Helicase conserved C-terminal domain 1214 1323 IPR001650 -
Acco02g1097 1519 Coils Coil 427 466 - -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 72 91 - -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 1453 1487 - -
Acco02g1097 1519 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Acco02g1097 1519 PANTHER HELICASE SRCAP-RELATED 87 530 - -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 30 91 - -
Acco02g1097 1519 Gene3D - 1181 1422 IPR027417 -
Acco02g1097 1519 MobiDBLite consensus disorder prediction 1397 1519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1097 Acco-ChrAcco02 7919712 7930416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1097 611 892 RAD5 or RAD16-like Gene Family AT5G43530 29.730 6.26e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco02g1097 SNF2_N 6.2e-67 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1097 02 7919712 7930416 Acco02g1097 02 7919712 7930416 ECH