Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1083 ATGGCGCCAAAAACAGCACCTTTGTCTCCAATCTCCATCGGTAACTGCGAGATAATCGTTGAGGCCAAAAGTTTCACCTGTAAGTCTGATTCAAACGGCCTCCAAATTTCTCTTCCAACAAGAGGGAAGATTAACGTATCAGTTGTGAAAGGCGAAAATGATTCGGAGAATCTTAAGCTCGAAGAAAGAGATCATAAATTCATCCTTGTTAATCCTAAAGATGCTGACAGCACTAGCAAATCCTACCTGCAGGAAGTATTGCAGATGTATATGACAGAACTCCCTGGAATGAATTATGCTGCAAACACTGGAAAACAATCGAAATTTCTAGAAAGATGCGTAACTAATGGGAAATATCGTACACTGCTTCTGAAATCTGGTTCTGCTGGAAATTCTGGAAAGGTTATAGCTGCCATTACGTATCAAATAGTCCCTGCAGATACAGAGTATGCTGAGATCCCACTTGCAGCGGTTAGTGCAATCCATCAACGCAAGGGTCTTGGTCATATGTTGTTTGTAGAGCTACGGAAGAGACTTCAACATGTTGGCATTCGTTCAATTTTGTGCTGGGGAGACAAAGAATCTGAAGGGTTTTGGCTTAAACAGGGTTTTATATCAATAGCAGAGGTGGACACCAAAGGTAGAGCTCGGAGGTTTCCTATAAAAGCTGGTATTCGTAAAGCATTATGCTTTCCCGGCGGTTCTACTCTCATGGTTTGCCATCTAAGGATGGAATTTTCAGCTGATGCTACGAACTCTATGAAGACTCTTCCCTCACAACAACCGAATTACTTGACATTTGGAAATGCAGAGAACGACCAACTTAAATTTACAGGACAGTTACACGTTGATTTGAACTTTTCAAATAACTCTACTGATAGAACAGATGACGTGGTGAAGAGTCATCCTAAGGCTTTGGTGAATGATGGATTCTCAAGTGAATTTGATAAATTGAGCAATAGTGACACACTGCCTGCTGTTGCAGGACTTGCAAACTATGTAATTGATGCTGAAATGGAGGATTGTTCTAATTCCATGAAAGGTGCAAAGAGGATTTGGGAAGCCTCTTTGTCATCATTAAAGTCAAAAAGAGTGAAAGGAAGCCATTTAATTGATGGTAGATCTGAGTCTAGCTGGGGTTTTGTCTCAGAGGTTGATAAGACTAATTCTTGTTTCGTGGGATGCTCATGGGGCGTTTCAAGTGGAAGGAGGTCAATGGGGCTTCCATGTGACGATTCTTTGATTGTCCAAGAAAAGAATACTGAGAAACTCAAAGGGGATTATTTACAGTTAGAAGCTAAAGTCAACAATGAACAGCTATCAACTAAACAATGCTTTAGAATCATGCTGATGAATATTGCTGATGATGCTAAGAAAACGCACCTTACAAAGGTAATTGAATCCCTTGGTGGCACTGTTACCTCTGAAGGAAGCATGACCACACATGTTGTTACAGGCAAAGTGAGGAAAACTTTGAATTTCTGCACTGCCCTCTGTTCAGGGGCTTGGGTGGTCTCATCAGATTGGTTAAAAGAAAGCTGCCGTGAAGGAAAATTTGTTGATGAGTTGGCTTACATATTAAATGATGAGGATTATCTATTGAAGTACAGATCTGATTTTAAAAGCGCACTTTTCCGAGCAAAAGCCAACCCCCGAGCTTTGTTCAAGGGGTACACTGTGTGTATTGCAGATCATGTTCAACCTCCAGCTAAAACACTATCTGCAATTGTGAGCTCTGCTGGTGGCAATGTTATTAGTGGGTTGAAGAAAGTAAATGAAACATCCTCAACCATTTTTGTGACATGTGAAGAAGATATGGAAGAAGCAATGGTAGCTGCAAAGAAGGGGATCCGAACATTCAGTAGTGAGTGGTTTATGAACTGTGTCATGAGGCAGGAACTAGACATGGAGGCCTTTCAATTTGCTGAGTCCTTACGGTGGGGGGAAGGAGGAGAAGGAGAGAAGTTGGGTAAAGAGCTGTGGCATCCAAACGTGGCAATGGCGACCATTGTCTCTGATCGTGTTTGTGTAAGAAGCGCTTATGATTATTCGGCTTCTTTCAATGCCAACTTGCAGGCTGCTCTGAGAAAGAAAAAGCCATGTACTCAGCTGGGAATTAGAGCTTGTCATTCCATGGTTGACAAGAAAAAAGTCTACGAACAAGTGGGTTTATTTTCTCTAAGAAGGAAAATTGAAGACACGGTACTTCGTGCCGAAATGTTTGCACCTACTGCCTTGGAAATGGAAGAAGCGAGATGGATTGAACAAGAAGAGATGATACGTAACTATGATCTATGGGATGATCTTAATAAGTCCAATGACATTCTAATCAAGTTAGCATACAGTGCCAAAGCGGTTGATGCTCTTAAGGACTTAAAATATAAGGTGGAGGAGGCAAAGCTGATTACTCAGTTGGCTGAGATGAATGCTATTGATTATGGGCTTTATAAGCAAGCATATGATGCATCTTTGGATGTAAGCAAGTTTCTGGATCGATATGAGACGTCTAAGCTTCTGAAGGGCCCATTTGATCTGGAGGGAGCTTGTTTGATTATTAAAGCTGGGACTGGAGGCATCTACCATAAGCTTTGGGCAGAACAGCTTCTAAGTATGTATCTTAAGTGGGCCAAAAAGCAAGGTCATGAAGGAAGAATAGTTGATACATGCCTGTTCGAGAATGGTGGTATTGACTCAGCAACTGTAGAATTTGAATTTGAGCATGCTTATGGTTATCTTTCAGGAGAAAAAGGAGCTCACCACATGATAAGTAGTTCTTTGGATGAATCTTCTCTGCTGCAGGCCAGCTCAGCAGTTGTGGATGTTGTTCCTATGTTCCTTGAAAATTCATCTGACCTGGAAATTGATCATGAGGATTTGATTATCTCATCATCTCCAAGTGTTGGAGAACAGAAGAGCCATACTGAGTCAAGAGTTTGCATTCAGCATCAACCTACAGGGATAAGTGCGGAATCATCAGGTGAGAGAACCCTCTTTGCTAATAAGATGAAGGCGCTTAATAGACTGAAAGCTAAACTTGAAGTGATAGCGAGGGAACAAGGAGTTTCTGGGATAAGTGGTATAAGGAAAGATGCCATCGTGAATCTATGGCAAGAAGAAACTCGTCGGTATGTTTCTCATTCGTACAAGCTAGTGCATGATAAAAAGACTGGCATTGAGGTGCCAGACCTAAATTCTGTTTTGGAAGGCAATATTGGATCCATCATTGCAGCTCATATCAATATCAGAAACTCCTGTCATCATAAGGTCTAA 3270 0.4144 MAPKTAPLSPISIGNCEIIVEAKSFTCKSDSNGLQISLPTRGKINVSVVKGENDSENLKLEERDHKFILVNPKDADSTSKSYLQEVLQMYMTELPGMNYAANTGKQSKFLERCVTNGKYRTLLLKSGSAGNSGKVIAAITYQIVPADTEYAEIPLAAVSAIHQRKGLGHMLFVELRKRLQHVGIRSILCWGDKESEGFWLKQGFISIAEVDTKGRARRFPIKAGIRKALCFPGGSTLMVCHLRMEFSADATNSMKTLPSQQPNYLTFGNAENDQLKFTGQLHVDLNFSNNSTDRTDDVVKSHPKALVNDGFSSEFDKLSNSDTLPAVAGLANYVIDAEMEDCSNSMKGAKRIWEASLSSLKSKRVKGSHLIDGRSESSWGFVSEVDKTNSCFVGCSWGVSSGRRSMGLPCDDSLIVQEKNTEKLKGDYLQLEAKVNNEQLSTKQCFRIMLMNIADDAKKTHLTKVIESLGGTVTSEGSMTTHVVTGKVRKTLNFCTALCSGAWVVSSDWLKESCREGKFVDELAYILNDEDYLLKYRSDFKSALFRAKANPRALFKGYTVCIADHVQPPAKTLSAIVSSAGGNVISGLKKVNETSSTIFVTCEEDMEEAMVAAKKGIRTFSSEWFMNCVMRQELDMEAFQFAESLRWGEGGEGEKLGKELWHPNVAMATIVSDRVCVRSAYDYSASFNANLQAALRKKKPCTQLGIRACHSMVDKKKVYEQVGLFSLRRKIEDTVLRAEMFAPTALEMEEARWIEQEEMIRNYDLWDDLNKSNDILIKLAYSAKAVDALKDLKYKVEEAKLITQLAEMNAIDYGLYKQAYDASLDVSKFLDRYETSKLLKGPFDLEGACLIIKAGTGGIYHKLWAEQLLSMYLKWAKKQGHEGRIVDTCLFENGGIDSATVEFEFEHAYGYLSGEKGAHHMISSSLDESSLLQASSAVVDVVPMFLENSSDLEIDHEDLIISSSPSVGEQKSHTESRVCIQHQPTGISAESSGERTLFANKMKALNRLKAKLEVIAREQGVSGISGIRKDAIVNLWQEETRRYVSHSYKLVHDKKTGIEVPDLNSVLEGNIGSIIAAHINIRNSCHHKV 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1083 1089 SUPERFAMILY BRCT domain 447 529 IPR036420 -
Acco02g1083 1089 Gene3D - 945 1038 - -
Acco02g1083 1089 SMART BRCT_7 440 517 IPR001357 -
Acco02g1083 1089 SMART BRCT_7 552 632 IPR001357 -
Acco02g1083 1089 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 436 527 IPR001357 -
Acco02g1083 1089 Gene3D BRCT domain 432 551 IPR036420 -
Acco02g1083 1089 Gene3D - 65 219 - -
Acco02g1083 1089 SMART PCRF_a_2 797 915 IPR005139 GO:0006415
Acco02g1083 1089 CDD BRCT_MDC1_rpt1 446 520 - -
Acco02g1083 1089 ProSiteProfiles BRCT domain profile. 550 634 IPR001357 -
Acco02g1083 1089 CDD NAT_SF 131 190 - -
Acco02g1083 1089 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 94 212 IPR016181 -
Acco02g1083 1089 ProSiteProfiles BRCT domain profile. 448 527 IPR001357 -
Acco02g1083 1089 Pfam Acetyltransferase (GNAT) family 131 204 IPR000182 GO:0016747
Acco02g1083 1089 SUPERFAMILY Release factor 751 1081 IPR045853 -
Acco02g1083 1089 Gene3D - 850 1075 - -
Acco02g1083 1089 SUPERFAMILY BRCT domain 545 634 IPR036420 -
Acco02g1083 1089 Gene3D BRCT domain 552 645 IPR036420 -
Acco02g1083 1089 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 685 1083 - -
Acco02g1083 1089 CDD BRCT_PAXIP1_rpt6_like 554 635 - -
Acco02g1083 1089 Pfam PCRF domain 752 925 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1083 Acco-ChrAcco02 7786427 7800240 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Acco02g1083 PCRF 3e-23 No_clan