Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1044 ATGTCTTCGGATGAGTCTCTAAGATCTCTATCTATGGACTATCTCAACCTCCTCATCAACGGTCAGGCATTCAGTGACGTCACTTTCAGCGTGGAGGGTCGCCTGGTTCCCGCCCACCGCTGCATCCTGGCGGCTCGAAGCCTCTTCTTCAGGAAATTCTTCTGCGGCCCGGACACGCCCTCCGGCCTCGACCTCATGGGCTCGGGCTCTCGGGTCAACTCGGCCACATCTCCGTCGTCCAGACCCGGAGTCATTTCGGTGAACTCGGTGGGCTATGAAGTATTCCTGCTTCTGCTTCAGTTCTTGTACAGTGGCCAAGTCTCAGTTGTGCCTCAGAAGCACGAGCCCAGGCCTAATTGCGGCGAAAGGGGCTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTTGATACTCTCGCTGCCGCTAGATCCTTTGGCGTTGAGCAGCTCGCATTGCTCACTCAGAAACAATTGGCCAGCATGGTAGAGAAGGCCTCCATTGAAGATGTGATGAAAGTGCTTCTAGCTTCAAGAAAGCAAGACATGCACCAACTTTGGACTACTTGTTCGCATCTGGTTGCCAAGTCAGGTCTCGCCCCTGAAGTCCTCGCAAAACACCTTCCCATCGATGTTGTTGCTAAAATAGAAGAGCTTCGCCTCAAAACGTCCCTCGTCCGTCGCTCCCTGATCCCCCACCACCACCACCACGACCATATCACCGCCACAGCAGATCTCGAGGACCAGAAAATCCGCCGAATGAGAAGAGCACTTGACTCCTCGGATGTTGAACTCGTGAAGCTCATGGTTATGGGAGAAGGTTTAAATCTAGACGAAGCATTGGCCTTACACTACGCCGTAGAGAATTGCAGCCGTGAAGTCGTTAAGGCCTTGCTTGAGCTCGGTGCAGCCGATGTCAACTACCCCGCCGGACCCGCTGGCAAGACCCCTCTCCACCTTGCCGCAGAGATGGTGTCACCGGACATGGTGGCTGTCCTCCTTGACCACCACGCGGACCCGAACGTCCGGACCGTCGACGGGGTAACACCTCTTGACATCTTGAGAACCCTAACTTCTGATTTTCTGTTCAAAGGAGCTGTCCCTGGGCTTGCTCATATTGAACCTAACAAATTAAGGTTGTGTTTGGAGCTGGTTCAATCCGCGGCTCTTGTACTGTCACGTGAGGAAGGCAATGCGAATCCTCCTGCTTCAACTGCCATTTATCCTCCAATGAACGAAGACCATAATAGAAGTAGTAGCAATAGCAATATTGCGAACCTTAATCTGGACACAAGGCTGGTTTACCTGAATCTGGGTGCGGCACAAATGGGTTCGAGATTGGAGGGCGACAAAGATAGCGGCCACAGTAGCCATCAGAACCGTCATGGCTCTCAAGGTGGATCATGTGACCAAACAATGTACCACCATTCTCATCACGACTATAATTAA 1452 0.5303 MSSDESLRSLSMDYLNLLINGQAFSDVTFSVEGRLVPAHRCILAARSLFFRKFFCGPDTPSGLDLMGSGSRVNSATSPSSRPGVISVNSVGYEVFLLLLQFLYSGQVSVVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLAPEVLAKHLPIDVVAKIEELRLKTSLVRRSLIPHHHHHDHITATADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLAHIEPNKLRLCLELVQSAALVLSREEGNANPPASTAIYPPMNEDHNRSSSNSNIANLNLDTRLVYLNLGAAQMGSRLEGDKDSGHSSHQNRHGSQGGSCDQTMYHHSHHDYN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1044 483 Pfam Domain of unknown function (DUF3420) 200 256 IPR024228 -
Acco02g1044 483 SUPERFAMILY POZ domain 8 162 IPR011333 -
Acco02g1044 483 Gene3D - 246 362 IPR036770 -
Acco02g1044 483 FunFam regulatory protein NPR5 isoform X1 4 197 - -
Acco02g1044 483 Pfam Ankyrin repeats (3 copies) 262 344 IPR002110 GO:0005515
Acco02g1044 483 MobiDBLite consensus disorder prediction 447 483 - -
Acco02g1044 483 SMART BTB_4 25 164 IPR000210 GO:0005515
Acco02g1044 483 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
Acco02g1044 483 ProSiteProfiles BTB domain profile. 25 111 IPR000210 GO:0005515
Acco02g1044 483 SMART ANK_2a 279 309 IPR002110 GO:0005515
Acco02g1044 483 SMART ANK_2a 314 343 IPR002110 GO:0005515
Acco02g1044 483 ProSiteProfiles Ankyrin repeat region circular profile. 314 344 - -
Acco02g1044 483 FunFam regulatory protein NPR5 isoform X2 245 362 - -
Acco02g1044 483 CDD BTB_POZ_NPR_plant 8 164 - -
Acco02g1044 483 MobiDBLite consensus disorder prediction 396 424 - -
Acco02g1044 483 Gene3D Potassium Channel Kv1.1; Chain A 4 197 IPR011333 -
Acco02g1044 483 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 477 IPR044284 GO:0099402
Acco02g1044 483 SUPERFAMILY Ankyrin repeat 273 357 IPR036770 -
Acco02g1044 483 ProSiteProfiles Ankyrin repeat profile. 314 346 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1044 Acco-ChrAcco02 7427855 7430100 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco02g1044 BTB 1.1e-13 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1044 02 7427855 7430100 Acco06g1194 06 8228596 8231039 CCT
Acco02g1044 02 7427855 7430100 Acco02g1044 02 7427855 7430100 ECH