Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1020 ATGAAGTCCGGATCCTTAGATTACTGGAGGAGTTACTTTCGAACGGCGAACTCGGATATATTTGATATTATCGACCATGCGATCATGGTGGCCGCTTCTGATTGTCCCAAGGAGTTTCGGTTTCGAAGGGATGGAATCGCGGAACGGTTGTTTTCTTGTCGGATGACTCGTTGTTTGGGTTGCGAGCGAGTGGAGTTGGCGGTATCTGGTGTTGACGAGGAGTTCGACGGAGGTTGCAAGAGTGGTTTTGATAGAGACGGAGCTGAAGTGGAAGCTGGTGCAAGTAAAGAGAGCAAGGCTCATAGTAGCAGAGATGACCATGGAGAGATGAATATGAACCACTTTAGCAATTATAGCCACGGAGAAGCTGAAGCATTGACGGATGAGATTGAAGAAGAGTCTCAATTGGTTGGTGAGATATTTAGGATCAAGGAAATTCTTCATAACTGCGAAGAAGAGTCTGATTCAGAATTATTTGAGTCGTTGAGGAGGCTCCAGCTGATGGAACTGTCCGTGGATCTTCTAAAGGCGACTGAGATTGGAAAGGCTGTCAATCCTTTCCGAAAGCATAGATCAAAAGAAATTCGTCAACTTTCACGGACTCTTATTGATGGCTGGAAAGAAATGGTGGATGAGTGGGTCAATGCTACCACAACCGATGCAGGTTCTGAAGGTACCCCAGATTCAGTAAATCCATCTGTTGTTGATGAAGAGGAAGAACAAGGGCTTCCTTCACCTCCTATGGATGAAGGGGCTTTCTTTGCAGCTCAAACTGCATCAATGGAGTTATCACAGTTCTTTGACGGCATGGATGATGATGGAAATCCTCGGCAGAGTGGGGAATTCATCAAGAACCGGGAAAATGGCAGAAGACCAGCACTGGACAATCAAAACATAGTAAAGATGAAACAACAGGCTTCTGATAGGGGGGACACCTTGGTCAAAGACAGAAGGATTCAGCAAGCAAAGGAAAATGAGGCTGTTGCGAAGCTAAATAAATCAGCAACTGCTATTGGTTCTGGTCCTGGCAGACCATTAAAATCAAGCATGCAACAAAGAGAGTATGTGGGGCCAAGGATGTTGCAAAAGATGGACAGGAGTGGTGTCCCCAAGAGGCCTCTTGCTGGTCCTCAAGATAAGTTGAAGTGTTCAGATGATGCTTCAGTCCAAATGAAGCTAGAAGCCACAAAGAGGAAACTTCAGGAGAGTTACCAACAGGCTGAAAATGCCAAGAAGCAGCGAACAATCCAGGTTATGGAGTTGCACGATCTCCCCAAGCAAGGAGGGATTGGCCACAGAAATACACATTTCAAACCTATGAAGAACCAAAACCGGAGTTGGGCTCTGGGACGAAGGTAG 1359 0.4606 MKSGSLDYWRSYFRTANSDIFDIIDHAIMVAASDCPKEFRFRRDGIAERLFSCRMTRCLGCERVELAVSGVDEEFDGGCKSGFDRDGAEVEAGASKESKAHSSRDDHGEMNMNHFSNYSHGEAEALTDEIEEESQLVGEIFRIKEILHNCEEESDSELFESLRRLQLMELSVDLLKATEIGKAVNPFRKHRSKEIRQLSRTLIDGWKEMVDEWVNATTTDAGSEGTPDSVNPSVVDEEEEQGLPSPPMDEGAFFAAQTASMELSQFFDGMDDDGNPRQSGEFIKNRENGRRPALDNQNIVKMKQQASDRGDTLVKDRRIQQAKENEAVAKLNKSATAIGSGPGRPLKSSMQQREYVGPRMLQKMDRSGVPKRPLAGPQDKLKCSDDASVQMKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGGIGHRNTHFKPMKNQNRSWALGRR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1020 452 CDD TFIIS_I 139 211 - -
Acco02g1020 452 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Acco02g1020 452 Coils Coil 390 417 - -
Acco02g1020 452 SMART TFS2_5 140 212 IPR003617 GO:0005634
Acco02g1020 452 MobiDBLite consensus disorder prediction 90 112 - -
Acco02g1020 452 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 224 IPR035441 -
Acco02g1020 452 MobiDBLite consensus disorder prediction 90 111 - -
Acco02g1020 452 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 439 IPR044805 -
Acco02g1020 452 MobiDBLite consensus disorder prediction 425 452 - -
Acco02g1020 452 MobiDBLite consensus disorder prediction 274 291 - -
Acco02g1020 452 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 224 IPR035441 -
Acco02g1020 452 MobiDBLite consensus disorder prediction 217 251 - -
Acco02g1020 452 MobiDBLite consensus disorder prediction 325 351 - -
Acco02g1020 452 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Acco02g1020 452 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1020 Acco-ChrAcco02 7192190 7194821 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Acco02g1020 Med26 6.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1020 02 7192190 7194821 Acco02g1020 02 7192190 7194821 ECH