Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1017 ATGCCTTCAAAGGGAAAAAAGCATGCCAAGACACAGTCGAGGCTATCCACTTCTGAAGTGGCCTGTCCTCGTACACCATCACTGACTCCTAACAGACATTCAGATGTGAGTGAAGAAGAACTTATCCTTTCACGTGAAGAAGCTTCAAAAATATTCCCCCCTTTCATTGGTAAATCTGCTTTTGTTGGCGATATCAGTGCTGTGGAGCTGAAATCCAAAGGCTGTAAAATTTGGCTTTCTGAGTCTTCCATGGTTTCTTCTTCCCTTGCCCCTGGTTCCATTGTGTCGGTGTCATTTCCATATTCAAGAAGGGAAAATCTGGATTCAGATAGCTTTCCTCTTAAATCATTAACGAAAGAATGTGCTGGATGCTATGGACTGGACTCTGGGAACACTTCAGTTGATGGCGCAGGAAACTACTTTGCTCTTGCAACAGTTTTTCCTTCTAGCAAGGTTTTGAAGAATGGAGTACAAATTTCATCAGAGCTTTCTTATACCATGGGATGTCCTACTATTGGTACACATGTGTTCGTTTATCCAGTGCAGAATCAATGCCTATCTTCTCTCGTAAATGAGAAAAATGAACCACATTCTATAGAAGATAATAGCCTGGTGGTGTATAATTGCAAGGAATTGTATCTTCAGTTGGCTCCTTTGAAGAATGGATTACCCATAAAAATCAGTAACATTTCACCAATGGACTTGTCTGCAGCAAAATCCCATCTTCAATTTGGGATTGAAAATATTACTTCTCCTAAAACACCTTCTAATGGATTGAAATTGTCTAGTTTGAGTGATTTATCTTCACCTATATTTGAAGATTCTTCTTCTAGCACACCTAATCAAAAGAGCCAATCACTGATTTCATTTGATCTAAGGGAGGCATTGGGGAATGAAAGCTCCAAAAAACTACTGCAGACATGTGTAGCTTCATGGTTGTATTCCCGTTGGTTACTGCCAGGGAATATTGTGACCATACAAATATTTTCAGAGCTGTGCGTTTTCCAAGTTGTAGGGGCTAAAAGGGTGTCAGTAGACCGATCTATTCCTGATTCATCAAGTGAAAGTGGTTCTTCATACCCAGAGGGTCCTGACATATCAGAGCATATAAATCAGGCTATCATTGTCAACCATGAAACAGAGGTATCTTTATCTCTGCCATCTAATGTGACTTCTGATGAGCTGATTCAAAGAGATTTGTCTAAGGTGGAACTCAAGGAGAAGGGCACTAAGGCTAGTGTACCTAATAATGTTTCAAAATTGGGTGGTCTTTCTAAAGAATATGCAGTTTTGAAGGATATAATTTTGTCTTCGGTAAAAAATGATCTATTAAGTAACTTTGGATTACGAATGACAAAAGGCGTCCTTCTTCATGGTCCTCCTGGCACAGGAAAAACTTCCCTAGCTCAATTATGTGCTCATGATGTGGGGGTCAATATTTTCCAGATAAATGGACCTGAAATTGTAGGCCAATATTATGGTGAAAGTGAGCAAGCATTGCACGAAGTTTTTGATTCTGCCATTCAGGCTGCACCTGCCGTGGTATTTATTGATGAGTTGGATGCTATTGCCCCTGCAAGGAAAGATGGTAGTGATGAGCTTTCTCAGAGAATGGTAGCGACCTTATTGAATCTTATGGATGGAATTTGTAGAACTGAAGGATTACTTGTTATTGCTGCCACCAACAGGCCTGACAATATTGAGCCTGCTCTGAGGCGGCCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCTCCTTACCAACGGTTGGATATGTTGCTTACTCTTCTCAGTGAAGTGGATCACACTCTTACAGAGATACAAATTGAACATCTCGCCACTGTCACACATGGTTTTGTGGGTGCTGATCTAGTTGCCCTTTGCAAAGAAGCAGGCTTGGTTTGTCTTAGACGTTATTTTAATTTTAAGAAGGATTGGCATGATTGCTGCTATGATGGAACATCCTCACAATATAAAGGTCAGCAACCTGCTTTGCTGAAAGGTGCAGAAGACTCAAGAGATCATTCTGGCCATTCAACTTCATCTGTTTCAGAGTTATCAGTGGCTTCAAACTCTTTGCTACCTTCTTGCATGATAGGTTCAACGTCTGACAATATAGACATGGTTCCTGATAGGGGTGAAGATCAGAATTTGAAAGTAACTTGTGAAGATTTTCAGAAGGCAAGAATGATAATAAGACCCAGTGCCATGAGAGAGGTAATCCTGGAGGTTCCTAAGGTCAAGTGGGAAGATGTTGGGGGCCAAAAAGATGTCAAGGCCCAACTGATGGAAGCAGTAGAATGGCCCCAAAAGCACCATGGTGCATTGAAGCGTATTGGAACTCACCCTCCAAAAGGTGTGTTGATGTTTGGGCCTCCAGGCTGTAGCAAAACTCTTATGGCACGTGCAGTTGCTTCTGAAGCTGCATTGAACTTTCTGGCTGTCAAGGGTCCGGAACTCTTCAGTAAATGGGTAGGTGAATCTGAGAAGGCTGTCAGATCTTTGTTTGCAAAAGCAAGGGCCAATGCCCCATCTATTGTATTTTTTGATGAAATAGACGGCCTTGCTGTTACAAGGGGAAAGGAAAATGATGGGATTTCAGTGACAGATAGAGTCATGAGTCAACTTCTAGTTGAATTGGATGGTCTGCATGAAAGAGCTAATGTCACTGTCATTGCTGCCACAAATAGGCCAGACAAGATTGATCCTGCCCTTTTACGACCAGGACGCTTTGACCGTCTGCTGTATGTGGGACCTCCAAATGAGATAGACAGAGAAGAGATATTTCGTATCCACTTGCATAAAATCCCATGTGGTTCTGATGTAAACCTGAAAGAACTGGCTTTTCTTACAGATGGTTGTACTGGTGCTGATATATCACTAATATGCCGGGAGGCAGCTGTTGCAGCTATTGAGGAGAGCCTTAAAGCTTCTGCAATAACAATGAAGCATTTGAAGATGGCAATTAAACAGGTCCAGCCAACAGAGATTCAGTCTTACCAACAGTTGTCAGCTAAATTTCAAAGGGCTGTCAGCACCTGTGATGTAAAACATGAGGGCAGCGATATGCTTGGCTCAAACAGATATACTTGGCCCTCCGTTGGGAAGTTCATAAGATCTGTCAAATTGTTTCTCTATTGGATTTCAGTGGCCATTTTTATTTGA 3171 0.4172 MPSKGKKHAKTQSRLSTSEVACPRTPSLTPNRHSDVSEEELILSREEASKIFPPFIGKSAFVGDISAVELKSKGCKIWLSESSMVSSSLAPGSIVSVSFPYSRRENLDSDSFPLKSLTKECAGCYGLDSGNTSVDGAGNYFALATVFPSSKVLKNGVQISSELSYTMGCPTIGTHVFVYPVQNQCLSSLVNEKNEPHSIEDNSLVVYNCKELYLQLAPLKNGLPIKISNISPMDLSAAKSHLQFGIENITSPKTPSNGLKLSSLSDLSSPIFEDSSSSTPNQKSQSLISFDLREALGNESSKKLLQTCVASWLYSRWLLPGNIVTIQIFSELCVFQVVGAKRVSVDRSIPDSSSESGSSYPEGPDISEHINQAIIVNHETEVSLSLPSNVTSDELIQRDLSKVELKEKGTKASVPNNVSKLGGLSKEYAVLKDIILSSVKNDLLSNFGLRMTKGVLLHGPPGTGKTSLAQLCAHDVGVNIFQINGPEIVGQYYGESEQALHEVFDSAIQAAPAVVFIDELDAIAPARKDGSDELSQRMVATLLNLMDGICRTEGLLVIAATNRPDNIEPALRRPGRFDKEIEIGVPSPYQRLDMLLTLLSEVDHTLTEIQIEHLATVTHGFVGADLVALCKEAGLVCLRRYFNFKKDWHDCCYDGTSSQYKGQQPALLKGAEDSRDHSGHSTSSVSELSVASNSLLPSCMIGSTSDNIDMVPDRGEDQNLKVTCEDFQKARMIIRPSAMREVILEVPKVKWEDVGGQKDVKAQLMEAVEWPQKHHGALKRIGTHPPKGVLMFGPPGCSKTLMARAVASEAALNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVTRGKENDGISVTDRVMSQLLVELDGLHERANVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEIDREEIFRIHLHKIPCGSDVNLKELAFLTDGCTGADISLICREAAVAAIEESLKASAITMKHLKMAIKQVQPTEIQSYQQLSAKFQRAVSTCDVKHEGSDMLGSNRYTWPSVGKFIRSVKLFLYWISVAIFI 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1017 1056 Gene3D - 586 749 - -
Acco02g1017 1056 Pfam AAA+ lid domain 943 988 IPR041569 -
Acco02g1017 1056 Pfam AAA+ lid domain 609 642 IPR041569 -
Acco02g1017 1056 FunFam Calmodulin-interacting protein 111 586 749 - -
Acco02g1017 1056 Gene3D - 750 1018 IPR027417 -
Acco02g1017 1056 Gene3D - 922 1007 - -
Acco02g1017 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 640 IPR027417 -
Acco02g1017 1056 ProSitePatterns AAA-protein family signature. 891 909 IPR003960 GO:0005524|GO:0016887
Acco02g1017 1056 MobiDBLite consensus disorder prediction 1 39 - -
Acco02g1017 1056 MobiDBLite consensus disorder prediction 664 684 - -
Acco02g1017 1056 CDD RecA-like_CDC48_NLV2_r1-like 420 583 - -
Acco02g1017 1056 Gene3D - 398 584 IPR027417 -
Acco02g1017 1056 FunFam calmodulin-interacting protein 111 isoform X1 746 921 - -
Acco02g1017 1056 CDD RecA-like_CDC48_r2-like 760 919 - -
Acco02g1017 1056 MobiDBLite consensus disorder prediction 14 32 - -
Acco02g1017 1056 PANTHER AAA-FAMILY ATPASE 72 1010 - -
Acco02g1017 1056 FunFam spermatogenesis-associated protein 5-like protein 1 922 1004 - -
Acco02g1017 1056 Pfam ATPase family associated with various cellular activities (AAA) 455 584 IPR003959 GO:0005524|GO:0016887
Acco02g1017 1056 Pfam ATPase family associated with various cellular activities (AAA) 789 920 IPR003959 GO:0005524|GO:0016887
Acco02g1017 1056 SMART AAA_5 785 923 IPR003593 GO:0016887
Acco02g1017 1056 SMART AAA_5 451 587 IPR003593 GO:0016887
Acco02g1017 1056 FunFam Putative vesicular transport protein (CDC48) 405 584 - -
Acco02g1017 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 999 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1017 Acco-ChrAcco02 7144128 7152348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1017 1 1047 Calmodulin-binding Proteins AT3G56690 56.314 0.0 1028