Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0996 ATGTCAAATAGCAGAAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCAGCTGCGGGGGCGTGATGTGGTTTGCCCTAATTGTAATGAGGGATTTATTCAAGAACTTCATGATATGGTCATCAACCCACTAGAATTCTTTGGATTAGACAATGTTGAAGAACGTGAACGTGACCAGAGGTTCAGAATTATGGAAGCCTTCCCTCCCTTTATGAGGCATCGACCAGTTAATAGAAGCCATAGGCATGACATCATAGTTGGATCAGATTCAATTCCTGAACATGGTCCAGGATATGCTCCTTTGCTGCTCTTTGGTGGCCAGATTCCAGTGAGATTGTCTGGACATGGTGGCTTTGAAGCACTTTTCAATGGGACTCCTGGAATTGGTCTGATGCAAGGCAATACAGGTGATTATTTTATTGGTCCTGGACTGGAAGAACTGTTCGAACAGCTTTCTGCTAATGACAGGCGAGGTCCTCCTCCAGCTTCCAGGTCCTCAATAGATGCAATGCCTACTGTTAAGATCACGCATAAGCTTCTTCGCTCAGACTCACATTGTCCAGTTTGCCAAGATAAATTTGAACTGGGGTCGGAAGCAAGGCAAATGCCATGTAAACATATATATCACTCAGATTGTATTGTTCCCTGGTTGGTACAGCATAACTCCTGCCCTGTTTGTCGCCAGGAGTTGCCACCACAAGGATTGAGCAGCAACCGTGGCTCCAATGGTAGAACTAGAAGCAATTCTGATAGTAATAGTGGAAGGGGAAGGGTAAGGGAGAACCAGGGCAGGCGGAACCCGTTCTCGTTTTTTTGGCCTTTCCGTTCATCTAATTCTAGCAACAATGGAGCAGGAGGAAGCAGCTCACCAACACAGCCTATCCCTGAGAATAGCCACCACACCGGCTATTCTGGATGGCCATTTGAGTAA 933 0.462 MSNSRNTHWCYSCRRPVQLRGRDVVCPNCNEGFIQELHDMVINPLEFFGLDNVEERERDQRFRIMEAFPPFMRHRPVNRSHRHDIIVGSDSIPEHGPGYAPLLLFGGQIPVRLSGHGGFEALFNGTPGIGLMQGNTGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTVKITHKLLRSDSHCPVCQDKFELGSEARQMPCKHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGSNGRTRSNSDSNSGRGRVRENQGRRNPFSFFWPFRSSNSSNNGAGGSSSPTQPIPENSHHTGYSGWPFE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0996 310 SUPERFAMILY RING/U-box 167 234 - -
Acco02g0996 310 MobiDBLite consensus disorder prediction 233 257 - -
Acco02g0996 310 FunFam E3 ubiquitin-protein ligase RING1-like 150 234 - -
Acco02g0996 310 MobiDBLite consensus disorder prediction 233 310 - -
Acco02g0996 310 CDD RING-H2_RNF126-like 187 228 - -
Acco02g0996 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Acco02g0996 310 Pfam Ring finger domain 186 228 IPR001841 -
Acco02g0996 310 SMART ring_2 187 227 IPR001841 -
Acco02g0996 310 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Acco02g0996 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 232 - -
Acco02g0996 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 234 IPR013083 -
Acco02g0996 310 MobiDBLite consensus disorder prediction 272 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0996 Acco-ChrAcco02 7008349 7009281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0996 122 232 C3H Transcription Factor Family AT5G01980 43.478 7.90e-26 105