Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0878 ATGAGGAGTCCAAGAGTGAAAGGGAAGATCACGCCATGTTGTAGCAAGGTAGGGATAAAGAGAGGGCCTTGGACGCCGGAGGAAGATGAGGTCTTGGCCAATTTCGTCAAGAAGGAAGGCGAAGGACGGTGGCGCACCCTTCCCAAGCGGGCGGGACTGCAGCGCTGCGGCAAGAGCTGCCGTCTCCGATGGATGAACTATCTCCGTCCCTCCGTCAAGAGAGGCCATATCGCTCCCGATGAGGAAGATCTCATCCTTCGCCTTCACCGCCTCCTGGGCAACAGGTGGTCTCTGATAGCTGGGAGGATACCTGGGAGGACCGATAACGAGATCAAGAACTACTGGAATACCCATCTAAGCAAGAAGCTTATAAGTCAGGGACTAGACCCTAGGACTCACAAGCCTTTACCCTCTTTCCACAATAATTCCAAAACTCATGAATCCAATAATCCTGATCAATCATCTGCACCACAGATTGATGGTGGCTGCAGCCAGCAAAATCAGACAAATAATATTATCCAAATCAACAGTTCTGTCGTCACTATTGGGAATAATTGGGTAACAAGTAGCGGCAAAGTGGCGGCGAGTCTTGAAGAAAATGGGGTTGAGGTTGAAGGAGAGGTTGCTGACAAGATTACGGGGGAAGAAGATGATACGTTATCTTCGTTTGTGGAATCTTTGATCAACAACAACGACAACCAAGTACTTGGGAATCAACAGTCGCAGGATGATGTCGACCTCCACGTGTTTCCTGCTCCACCACCACATCTAACAATGGCTTCTTCTTCTTCTTCCCACCAATTTTTCGATCTTTCCTTCTGGGAATCTGAATTCCAGAGTTTCGGAGGAGATCATCAACAGTATGGTTACCCTTTCAAGTAA 882 0.4853 MRSPRVKGKITPCCSKVGIKRGPWTPEEDEVLANFVKKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGLDPRTHKPLPSFHNNSKTHESNNPDQSSAPQIDGGCSQQNQTNNIIQINSSVVTIGNNWVTSSGKVAASLEENGVEVEGEVADKITGEEDDTLSSFVESLINNNDNQVLGNQQSQDDVDLHVFPAPPPHLTMASSSSSHQFFDLSFWESEFQSFGGDHQQYGYPFK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0878 293 MobiDBLite consensus disorder prediction 136 166 - -
Acco02g0878 293 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 11 196 - -
Acco02g0878 293 MobiDBLite consensus disorder prediction 127 166 - -
Acco02g0878 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Acco02g0878 293 SMART sant 73 121 IPR001005 -
Acco02g0878 293 SMART sant 20 70 IPR001005 -
Acco02g0878 293 CDD SANT 79 119 IPR001005 -
Acco02g0878 293 CDD SANT 23 68 IPR001005 -
Acco02g0878 293 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Acco02g0878 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Acco02g0878 293 FunFam Myb transcription factor 18 74 - -
Acco02g0878 293 Gene3D - 78 156 - -
Acco02g0878 293 FunFam transcription repressor MYB5-like 78 148 - -
Acco02g0878 293 Pfam Myb-like DNA-binding domain 79 119 IPR001005 -
Acco02g0878 293 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Acco02g0878 293 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Acco02g0878 293 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Acco02g0878 293 Gene3D - 21 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0878 Acco-ChrAcco02 6162974 6163965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0878 6 230 MYB Transcription Factor Family AT3G13540 58.667 4.58e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco02g0878 Myb_DNA-binding 5.9e-15 CL0123