Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0877 ATGGAAATTCAATTCCAGCAGCCAAAGCAGCAGCATCAGAAAGCAGGCATTCCGATCAGCAAACTGGGGAAATTCAAAGGAAGAAACAGAAGCCGAGGAAACCCAAACAAGTTTGTAGGGGTGAGGCAGAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCGGAGGAAGCTGCCAGAGCTTATGATGAAGCTGCTTGCCTTCTTCGAGGAGCCAACACTCGCACCAACTTCATCACCCATGTCTCCTTGGATTCTCCTCTGGCCTCCCGGATTAGGAATCTTCTCAACAACAAAAAAGCTGCAACTAAGCAACAACAACAACAACAACAAAAAGATCTTGTGGTAGCAGCCTCTGCCCCTAAAGCCAGAAGGATCAATACTAGCACTACTAGTAGTACTAGTGCTAGTATTAGCAGTAGTTCTAGCAATAATATTGACAGCAAAGAAAGTTCTCTTTCCAGTGGGACAGTCCAAGACACCTCTCTATTTGATGATGCTTATAGACCAGATATGAGCAACTGCAAGGAGGAATTTGGGTTTGGTTCCACGTCCACTCTTTCATGGGGTGGTCTTGGACCGGTTTTTGATCAGTTTCCTCTTCCTCAGGTTTCAGATGTTCCTAAGAATGATGGGGGTATGTCTAATGTTGGTGACTTGGATCTTATAGAATTTGAGAGGATGAAAGTTGAGAGGCAAATTTCAGCTTCACTGTATGCGATTAATGGAGTGCAAGAGTACATCGAAACTGTTCAGGACTCCAGTGAAGCTCTGTGGGATCTTCCACCCTTGTGTTCACTGTCCTGTTAA 855 0.4515 MEIQFQQPKQQHQKAGIPISKLGKFKGRNRSRGNPNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGANTRTNFITHVSLDSPLASRIRNLLNNKKAATKQQQQQQQKDLVVAASAPKARRINTSTTSSTSASISSSSSNNIDSKESSLSSGTVQDTSLFDDAYRPDMSNCKEEFGFGSTSTLSWGGLGPVFDQFPLPQVSDVPKNDGGMSNVGDLDLIEFERMKVERQISASLYAINGVQEYIETVQDSSEALWDLPPLCSLSC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0877 284 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 249 - -
Acco02g0877 284 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Acco02g0877 284 MobiDBLite consensus disorder prediction 114 172 - -
Acco02g0877 284 MobiDBLite consensus disorder prediction 114 130 - -
Acco02g0877 284 MobiDBLite consensus disorder prediction 138 172 - -
Acco02g0877 284 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Acco02g0877 284 Coils Coil 107 127 - -
Acco02g0877 284 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Acco02g0877 284 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Acco02g0877 284 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Acco02g0877 284 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Acco02g0877 284 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Acco02g0877 284 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Acco02g0877 284 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0877 Acco-ChrAcco02 6154511 6155365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0877 24 284 AP2-EREBP Transcription Factor Family AT5G19790 41.264 9.32e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco02g0877 AP2 7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0877 02 6154511 6155365 Acco02g0877 02 6154511 6155365 ECH