Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0856 ATGGATGTGTGCCGGAATGTATCAGTTTCCGGTGAGTGCAAGCAAGAGCAGGTTCTTTCACCTTCTTGCTCAAAGCTTTCTTCCTTCTCAACCAGCCTCGATGACCTCTTCTCTACTCAGAACACGGAGGTGGATGTCGGATTGGAGTGGCTGTCAGTGTTTGTTGAAGACTGCTTTTCAAGCCAAGCAAGCTGCCTCTTGGCACCTCCTGATGTTCATCAAGCTACAACCACAACCTCCAAACCTTCACAACCATTGCAGAGACCCCACCAGAATGAGTCTTCTTTGCAAAATTTTACGGTACCCGGAAAAGCCAGAAGCAAAAGGAAGAGACTTTCAGCCCCAAGAGCCAAAGACCCTTTGAGCATCTGGTCACACCATTTAAACCCACAAAACGAAGCCATAAGCTCAGATCCTCCTCTGCTCAAACAGGCTTACTGGTTAGCAGACAGTGAACTCATCTTCCCCAAGAAGAAGGCAAAGGAGGAAGAGGAGGAAGAAGAAGAAGAGATGGAGAAGAGGATGATGGTGAGGAAGGAATCGGAGAGTGAGGTCAGCAATGGGCAAAATCCAATGCCAAGGAGGTGCAGTCACTGCTTGGCACAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAAACACTCTGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTACAGGCCAGCCAAGAGTCCAACTTTTGTGAGCTACTTGCACTCCAATTCCCACAAGAAAGTTATGGAGATGAGGATGTCTCTTGTTTCTTCTTCTATTCCCAGAGAGCACCAGTGA 816 0.4877 MDVCRNVSVSGECKQEQVLSPSCSKLSSFSTSLDDLFSTQNTEVDVGLEWLSVFVEDCFSSQASCLLAPPDVHQATTTTSKPSQPLQRPHQNESSLQNFTVPGKARSKRKRLSAPRAKDPLSIWSHHLNPQNEAISSDPPLLKQAYWLADSELIFPKKKAKEEEEEEEEEMEKRMMVRKESESEVSNGQNPMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLVSSSIPREHQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0856 271 Pfam GATA zinc finger 196 230 IPR000679 GO:0006355|GO:0043565
Acco02g0856 271 Gene3D - 185 259 IPR013088 GO:0006355|GO:0008270
Acco02g0856 271 ProSiteProfiles GATA-type zinc finger domain profile. 194 226 IPR000679 GO:0006355|GO:0043565
Acco02g0856 271 Coils Coil 157 181 - -
Acco02g0856 271 MobiDBLite consensus disorder prediction 73 118 - -
Acco02g0856 271 ProSitePatterns GATA-type zinc finger domain. 196 221 IPR000679 GO:0006355|GO:0043565
Acco02g0856 271 MobiDBLite consensus disorder prediction 158 192 - -
Acco02g0856 271 PANTHER GATA TRANSCRIPTION FACTOR 16 263 - -
Acco02g0856 271 MobiDBLite consensus disorder prediction 73 102 - -
Acco02g0856 271 FunFam GATA transcription factor 184 270 - -
Acco02g0856 271 CDD ZnF_GATA 195 242 IPR000679 GO:0006355|GO:0043565
Acco02g0856 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 254 - -
Acco02g0856 271 SMART GATA_3 190 244 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0856 Acco-ChrAcco02 6046653 6047830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0856 20 258 C2C2-Gata Transcription Factor Family AT4G32890 40.891 1.35e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco02g0856 GATA 6.9e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0856 02 6046653 6047830 Acco06g1371 06 9508805 9509918 CCT
Acco02g0856 02 6046653 6047830 Acco02g0856 02 6046653 6047830 ECH