LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g0821	ATGAACACATCAAATTCGTCATCGCCTTCCAAGGCGAAAAGGAAGCAAACGGCGACAACATGCGCCAAGACAGTGCCAGAGCAACAACATGGGACGGCGTGGGGAGGAAGGTACCTGGGTGTTCGGAGAAGGCCGTGGGGAAGATACGCGGCGGAGATCAGAGACCCGTCCACCAAAGAGAGGCACTGGCTCGGCACCTTCGACACTGCTGAGGAAGCTGCCTTAGCCTACGACAGAGCAGCACGCTCCATGCGAGGCTCCCGCGCTCGAACCAACTTCGTATACTCAGATACTCCTCCCGGTTCCTCCGTAACTCCTATAATCTCCCCTGACGAGGAATCGCGCCAGAACCACGACTTCTCGTCTCTCTTCGCATCAAACTTGCTTGCTCAACAACCCAACCCTGCTGATCGGCAGACGGAATGCGCCCTCGCGGGCGGGTTCTTGGGCGTGAAGGATGATGATGTTGGTGCCTGGGCAGTTTCATCGGGGAATTATTCCCAGCAATATCAATCCCCGACCACGATGGACGTGCATGACGTGCCCCATTTCCGCCAATTGTATGATGATAGCAACACTGAACTCCCGCCATTGCCACCGGATATTACAAGCTCCTTAGGTTACGAAATGGGCCATGAGTTTTACGATAATGGCTTTGGATATTCTGAGCAAAGCCCAGGAACGGGATTTGAAGCAATAACGAGCTGGCCTTCGTGCTCGTATACGGGCTTGGATTCGGGTGATTACATTCATAGCCCACTGTTGAGCACAATGCCAAAGGTATCAGAAAAGATGCCGGAAGGTTTTGAATTGGGAAGTTCCTCCTATTTCTTCTGA	837	0.5317	MNTSNSSSPSKAKRKQTATTCAKTVPEQQHGTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDTPPGSSVTPIISPDEESRQNHDFSSLFASNLLAQQPNPADRQTECALAGGFLGVKDDDVGAWAVSSGNYSQQYQSPTTMDVHDVPHFRQLYDDSNTELPPLPPDITSSLGYEMGHEFYDNGFGYSEQSPGTGFEAITSWPSCSYTGLDSGDYIHSPLLSTMPKVSEKMPEGFELGSSSYFF	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g0821	278	ProSiteProfiles	AP2/ERF domain profile.	37	94	IPR001471	GO:0003700\|GO:0006355
	Acco02g0821	278	Gene3D	AP2/ERF domain	36	95	IPR036955	GO:0003700\|GO:0006355
	Acco02g0821	278	FunFam	Ethylene-responsive transcription factor 2	37	95	-	-
	Acco02g0821	278	SUPERFAMILY	DNA-binding domain	37	95	IPR016177	GO:0003677
	Acco02g0821	278	CDD	AP2	37	93	IPR001471	GO:0003700\|GO:0006355
	Acco02g0821	278	MobiDBLite	consensus disorder prediction	1	27	-	-
	Acco02g0821	278	Pfam	AP2 domain	38	86	IPR001471	GO:0003700\|GO:0006355
	Acco02g0821	278	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	14	138	-	-
	Acco02g0821	278	MobiDBLite	consensus disorder prediction	1	28	-	-
	Acco02g0821	278	PRINTS	Ethylene responsive element binding protein signature	38	49	IPR001471	GO:0003700\|GO:0006355
	Acco02g0821	278	PRINTS	Ethylene responsive element binding protein signature	60	76	IPR001471	GO:0003700\|GO:0006355
	Acco02g0821	278	SMART	rav1_2	37	100	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g0821	Acco-ChrAcco02	5790116	5790952	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g0821	1	269	AP2-EREBP Transcription Factor Family	AT5G13910	41.844	1.12e-50	164

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco02g0821		AP2	1.8e-13	CL0081