Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0729 ATGGCGGGAGAGGAGCCGCGCAAGCAAAGCCCATCTTTGTGCCCGTATTCTGCTACTACTTCTCCTTCTCCTTCTCCTTCTCTACCAGGGATAAAGGATGATTCGAACCAAAAATGCTGGAGGAAGCAAGCAGACGAGAATCTCAAGAGGCTTCACTCTCTTCTCTTCGGGGCCGATCTTGCCCTGAAGAAAGATGATTTTGAGTCGGCGTACATCCTCGGGCTTCGCCTCATCGGCTTTCTCGACTCTCGCTGCCACTCCGATGTCGATGAAGCCTATATACGTCCAATTCGACATGAAGTAATGGGGAAAATTGACACCGCTCGTCGATCCCTCATTCCCGATTCTGATCGCCAAGCGTTTGAACAAGCAAAAAAGTCTCCAGGGTGTATTTTTGGCAAAACAGGAGATATTGACATTGGGAAGATTAAGAAGTCGAAGTACTTCCAAGCTCTTCTCAAGGAATCCAGAGAAAAGGGTTATCATCTGGAGAAGCAAGACAATGCAGGAAGCAAAGTACCAAAAGAATCGCTAAAAACCAAGTTAACATCAATGTATGGGAGAAGTACATTGAGGGCTAATAGTAGTGCCAAATTGAGTTTCAAACATAATAGATCTGAGGACTGCATGATTGTTGAAAAGTCTATGTCACATGGTGGCCACAGTAAGGGTCATCCTGTCTCTTCCTTCTTGAAAACTGAAGGGGTAGAAAGAACTTTTGGAACTTTTGGGAAAAAGCGTGTGCACTTGGAAACTAATAACCCCCAAGTTAGCAACGTGAAGTCACCTTCAAGCAATGAGGAAGCGAAGTCTGATTTTGTTACTGCCAGAGCTAAACTGGAAATGGAAACAAGGCAGAGGCGAGAAGGGATTGGTTCACCCACTGCATCTGTCTCACAGTATGATATCAATACTTCGAATCGGGTATATGGTGGGAGATCATATGGTGTTTCTCGACGTGGCGTCCGTGGTAATTTTGTGCCTCCTATTAAATCCAATGGAACTGGCGATGGAAATATGACGTCAAGAAATTCTGGAAAGTGTGATGATACTTTAGATGACTCAACAAAGAGATGTTTGGATGGGCTATGTGGTCCTGACGGAGAGCTTCCTGAGAAATTGAGGAATATAGAACCACGCCTTATTGAACATATTAGCAATGAGATTATGGATAGAGATCCTAACGTCCGGTGGGATGACATTGCGGGATTGGAACATGCCAAGAAATGTGTCACTGAGATGGTCATATGGCCTCTGTTACGACCTGATATATTCAAGGGATGCCGCTCTCCTGGGCGAGGTCTACTTTTATTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATCTCGGCAAGTTCATTGACAAGCAAGTGGATCGGAGAAGGTGAAAAACTAGTGAGAGCACTCTTTGGAGTTGCCAGTTGTCGCCAGCCGGCTGTAATATTTGTGGATGAAATAGATTCTCTCCTATCTCAGCGTAAGTCAGAGGGTGAACACGAATCAAGCAGAAGGCTAAAGACACAATTTCTCATTGAAATGGAGGGTTTTGACAGTGGTAACGAGCAGGTTCTTCTTATAGGGGCCACCAACCGTCCTCAAGAGCTTGATGAAGCAGCACGAAGGCGACTTACCAAAAGACTTTATATCCCCCTGCCATCCTCAGAGGCAAGAGCCTGGATTATACGTAACCTCCTGGATAAGGACGGACTATTCCTGCTGACAAAGGAAGAGATTGATACCATATGCAACAAAACGGAAGGATATTCGGGATCAGACATGAAAAATTTGGTGAAGGATGCTTCAATGGGTCCCCTAAGAGAGGCTTTCGAGAAGGGCATAGAAATTACCAAGTTGAACAAGGAAGATATGCGGCCAGTAGCTCTTCAGGACTTTATGGACGCTCTAAAAGAGGTGAGGCGATCTGTTTCCTCAAATGAACTGGGCGCTTATGAAAAATGGAACGAACAATTCGGAAGCCTATCATCGGAGAAGCTGCAGTCATTTGTATGA 2052 0.4518 MAGEEPRKQSPSLCPYSATTSPSPSPSLPGIKDDSNQKCWRKQADENLKRLHSLLFGADLALKKDDFESAYILGLRLIGFLDSRCHSDVDEAYIRPIRHEVMGKIDTARRSLIPDSDRQAFEQAKKSPGCIFGKTGDIDIGKIKKSKYFQALLKESREKGYHLEKQDNAGSKVPKESLKTKLTSMYGRSTLRANSSAKLSFKHNRSEDCMIVEKSMSHGGHSKGHPVSSFLKTEGVERTFGTFGKKRVHLETNNPQVSNVKSPSSNEEAKSDFVTARAKLEMETRQRREGIGSPTASVSQYDINTSNRVYGGRSYGVSRRGVRGNFVPPIKSNGTGDGNMTSRNSGKCDDTLDDSTKRCLDGLCGPDGELPEKLRNIEPRLIEHISNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFDSGNEQVLLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLDKDGLFLLTKEEIDTICNKTEGYSGSDMKNLVKDASMGPLREAFEKGIEITKLNKEDMRPVALQDFMDALKEVRRSVSSNELGAYEKWNEQFGSLSSEKLQSFV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0729 683 Pfam Vps4 C terminal oligomerisation domain 638 672 IPR015415 -
Acco02g0729 683 Gene3D - 394 668 IPR027417 -
Acco02g0729 683 PANTHER AAA DOMAIN-CONTAINING 253 673 - -
Acco02g0729 683 MobiDBLite consensus disorder prediction 332 346 - -
Acco02g0729 683 MobiDBLite consensus disorder prediction 12 32 - -
Acco02g0729 683 FunFam Fidgetin like 1 566 652 - -
Acco02g0729 683 Pfam ATPase family associated with various cellular activities (AAA) 435 565 IPR003959 GO:0005524|GO:0016887
Acco02g0729 683 ProSitePatterns AAA-protein family signature. 537 556 IPR003960 GO:0005524|GO:0016887
Acco02g0729 683 FunFam Fidgetin-like 1 394 576 - -
Acco02g0729 683 SMART AAA_5 431 567 IPR003593 GO:0016887
Acco02g0729 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 671 IPR027417 -
Acco02g0729 683 MobiDBLite consensus disorder prediction 321 349 - -
Acco02g0729 683 Pfam AAA+ lid domain 592 628 IPR041569 -
Acco02g0729 683 MobiDBLite consensus disorder prediction 1 35 - -
Acco02g0729 683 Gene3D - 566 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0729 Acco-ChrAcco02 5135717 5141025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0729 372 674 Calmodulin-binding Proteins AT3G56690 32.468 2.14e-40 157