Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0678 ATGGCTTATTATCTTCCTCTCTTTCTTCTTCTCCTCTCTGCTCTCTCTCTTGTTTCCGCTTTCGCAGTGCCACACCCTGACCTAGTTGCCCAAGACGTTCACAGGAGAATCAATGCGTCGAGAAGAAACCTGGGGTACTTATCTTGCGGAACTGGGAACCCCATAGATGACTGCTGGCGATGTGACCCCAGTTGGGAGAAGAACCGGCAAAGGCTGGTCGATTGTGCCATTGGGTTCGGTAAGGACGCCGCCGGAGGAAGGAACGGCCGCATCTACGTCGTGTCGGACTCCGGGGACGACGACCCTGTGAACCCCAAGCCAGGTACTCTCAGACACGCCGTTATACAGGAGGAGCCACTGTGGATCATCTTCAACAGGGACATGGTGATCAACCTGAAGCAAGAGCTCATCATTAACTCCTTCAAGACCATCGACGGAAGAGGAGCGAGTGTTCACATCGCGGACGGCGGCTGCATTACCCTCCATTACATCAACAACGTCATCATCCACGGCATTCACATCCACGACTGTAAGCCCACGGGGAACACGGAGATCAGAGACTCTCCCACCCACTCAGGCTTCTGGACGGTGTCGGACGGAGACGGCATCTCCATTTTCAACTCGAAGCACATATGGGTGGACCACTGCTCCCTATCGAACTGCCACGACGGGCTCATCGACGCCATCCACGGATCCACGGCGATCACCATCTCCAACAACTACATGACGCATCACGACAAGGTGATGCTGTTGGGTCACAGCGACGAGTACACGCAGGACAGGGAGATGCAGGTGACGGTGGCGTTTAATCACTTCGGAGAAGGGCTGGTGCAGAGAATGCCGAGGTGCAGGCACGGGTATTTTCACGTGGTGAACAACGATTACACTCACTGGGAAATGTACGCCATCGGAGGCAGTGCGGATCCCACCATCAACAGCGAAGGGAACAGGTTTCTTGCGCCTGATAATAGGGCCAGCAAAGAAGTGACGAAGCGCGAGGAGGCTCCAGAGGGCGAGTGGAGCAACTGGAATTGGAGATCGGAAGGGGATCTTTTCTTGAACGGCGCTTTCTTCACACAATCAGGTGCTTCTTCTTCTTCACCCTATGCTAGAGCGTCGAGCCTGAGTGCTAGGCCGTCTTCTCTGGTAGGCTCTATCACCCTCACCTCTGGCGCACTTATCTGCAGAAAGGGCAGTCGTTGCTGA 1206 0.5489 MAYYLPLFLLLLSALSLVSAFAVPHPDLVAQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPSWEKNRQRLVDCAIGFGKDAAGGRNGRIYVVSDSGDDDPVNPKPGTLRHAVIQEEPLWIIFNRDMVINLKQELIINSFKTIDGRGASVHIADGGCITLHYINNVIIHGIHIHDCKPTGNTEIRDSPTHSGFWTVSDGDGISIFNSKHIWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDEYTQDREMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSEGNRFLAPDNRASKEVTKREEAPEGEWSNWNWRSEGDLFLNGAFFTQSGASSSSPYARASSLSARPSSLVGSITLTSGALICRKGSRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0678 401 SMART amb_all 127 324 IPR002022 -
Acco02g0678 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Acco02g0678 401 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Acco02g0678 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Acco02g0678 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Acco02g0678 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Acco02g0678 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Acco02g0678 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Acco02g0678 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Acco02g0678 401 Gene3D - 52 394 IPR012334 -
Acco02g0678 401 SUPERFAMILY Pectin lyase-like 30 395 IPR011050 -
Acco02g0678 401 Pfam Pectate lyase 134 318 IPR002022 -
Acco02g0678 401 FunFam Pectate lyase 52 394 - -
Acco02g0678 401 PANTHER PECTATE LYASE 18-RELATED 33 399 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0678 Acco-ChrAcco02 4751092 4752394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0678 1 401 Polysaccharide Lyase AT5G63180 72.840 0.0 612