Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0655 ATGTCGAGATCATTATACCTAACTCACGTATCGTTCCTCATAACCAATTCTAGAGCCATGGCTTCTGCAAGAGTTTTCTATCATGCCCTTCCATCTTCAAAATTCACATCCTTCAACAAAGCTAACACTTTCTCCATATCACCCTCCCTACGAAACTTCTCCACCACTCGAACACCATATCCACTTCAGTACGAGATGATTATCAGCCGTCCTGTCAATTCTGTGCATGCCCATTCTCGCCGGCGACCTGTTCGACAAAATGACTCCAATGCAGAGGGCTTCCCTGAATCCGAGAATCCGGAAGAGTCCGTTTCTCCAGAAGAGGCCGTTTCTGAATTGGGATTAGATAGCTGGGTTGATCGGAAATTGGCTTCTGAGAAAGAAGCTGACCAACCCGGTTCCCAAAAGTTGGAGCTTGACAAGGCTAAGAGAAAATATTACAGAAAACGGAGCAAGAGGATGTATGGATCGGACTCTGATGAAGAAAATAGAGGACCTGAAGAGAAGTTCGTGGAACTGAAGCCTGAGGTGGTAGAGCTTCCTACATTGCACAAGAGGGAGGAGGAATTGTATTTCTACGATGCGTTTTGTTACCCGTGGGAAAAGGAGAAGCATTATAAGATGGTCTATCAGTTGGAGAAAAAATATTTTCCTGATCAGTGTCTTGATAAGGCGTTCCTAGAACCGGGAGAATCAAATACAAACGTGAATGTAACTACAGATACAAAGACTAAGAGCAAGTCGAGAGGGGAAAAGAAGAAAGTCAGGGGAGATGCAAGGGAGAAAAAAGATGCAACTAGTGATGAAATAAATGATAAGAAGTTGATATTTTTCGAGAAGAAGCAAGAAGAAGAAAAGGATAACAGAGGATTGGTTAAGGAAACAGGAGGAGATCTAACCGAAAAGAAGGTCGAAGAGTTCTTTAAGTATTTGAAGAAAATTCCGAATAAGGATGTTGAAGTGGGTAATGCTGAGCCGTTTCTTGCGTCAAGGAATTCTGGGCTTCCTCCTAGATGGGATGGTCCTCATGGAACCGTTGTTTTGGTGAATAAACCCAAAGGTTGGACTTCATTTACAGTTTGTGGAAAGCTGCGTCGCTTAGTCAAAGTGAAAAAGGTAGGTCATGCCGGAACTCTTGATCCAATGGCTACGGGCTTATTGATTGTTTGTGTTGGTAAAGCAACAAAAATAGTGGATAGATATCAAGGGATGATTAAAGGCTATAGTGGAGTTTTCCGCCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCGGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAGAACTGCAGCATCCTTTTGTGGGGAGATTTGGCAAGTTCCCCCGATGTTCTCTGCTATTAAAGTTGGAGGTGAGAAAATGTACGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCGAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGTTTGGATGATCGACAAAATTTGATTTTTAGGGTAACATGTTCCAAAGGGACATATATTCGTTCACTATGTGCAGATTTTGGGAAAGCTCTTGGCAGTTGTGCCCATTTAACTGCTCTCCGGAGAGATTCAATCGGAGAATATTCAGCAGATGATGCATGGGACTTCGCAGAGCTGGAAGAGGCTATTTCCAAAAATTATTTCTAA 1692 0.4297 MSRSLYLTHVSFLITNSRAMASARVFYHALPSSKFTSFNKANTFSISPSLRNFSTTRTPYPLQYEMIISRPVNSVHAHSRRRPVRQNDSNAEGFPESENPEESVSPEEAVSELGLDSWVDRKLASEKEADQPGSQKLELDKAKRKYYRKRSKRMYGSDSDEENRGPEEKFVELKPEVVELPTLHKREEELYFYDAFCYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGESNTNVNVTTDTKTKSKSRGEKKKVRGDAREKKDATSDEINDKKLIFFEKKQEEEKDNRGLVKETGGDLTEKKVEEFFKYLKKIPNKDVEVGNAEPFLASRNSGLPPRWDGPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKIVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRTAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGEYSADDAWDFAELEEAISKNYF 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0655 563 SUPERFAMILY Pseudouridine synthase 345 558 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco02g0655 563 Pfam tRNA pseudouridylate synthase B C-terminal domain 516 559 IPR032819 -
Acco02g0655 563 Pfam TruB family pseudouridylate synthase (N terminal domain) 365 515 IPR002501 GO:0006396
Acco02g0655 563 MobiDBLite consensus disorder prediction 73 109 - -
Acco02g0655 563 MobiDBLite consensus disorder prediction 230 266 - -
Acco02g0655 563 Gene3D Pseudouridine synthase 341 562 - -
Acco02g0655 563 CDD PseudoU_synth_EcTruB 346 557 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco02g0655 563 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 215 561 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco02g0655 563 MobiDBLite consensus disorder prediction 244 266 - -
Acco02g0655 563 FunFam tRNA pseudouridine synthase B 340 562 - -
Acco02g0655 563 Hamap tRNA pseudouridine synthase B [truB]. 343 563 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Acco02g0655 563 NCBIfam tRNA pseudouridine(55) synthase TruB 345 554 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0655 Acco-ChrAcco02 4607190 4610942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0655 311 537 NAC Transcription Factor Family AT3G57150 31.278 1.21e-20 93.6