Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0642 ATGGAATCGCCCATTAACGACCCTTCTGTTGACGGAGAAACCAACGATGCGAGGTCTTTAGGCCACAGAGAAGAGGAGGAGGATAAGTCTCAGCCTCTTACAGGCGACGGGGCAAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACAATTGCTCAATTTGTCAAGCACTTCGGTAAATATGGCGAGATTACCGACTCTGTAATAATGAAGGACAGGAAGACTGGGCAACCGCGTGGATTTGGTTTTATAACTTACGCAGATCCCTCTGTGGTTGATAGGGTCATCGAAGATACTCATGTCATCAATGGAAAACAAGTGGAAATTAAACGTACTATACCCAGAGGAGCTGTTGGCTCTAAGGATTTCAGGACGAAGAAAATTTTTGTGGGCGGAATTCCGTCAACCGTGACTGAAGATGAGTTTAGTGACTTCTTTAATCACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCCACCAATCGTTCTCGTGGCTTTGGGTTTATTACTTTTGAGACTGAGGATGCTGTTGAAGATCTCCTGGCTAAGGGGAACAAAATAGAGTTTGCTGGGACTCAAGTGGAAATTAAAAAGGCTGAGCCAAAGAAACCAAACCCACCACCAGCCTCCTCCAAGCGCTATAATGACTCGAGATCTTCATTTGGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGCGGTTTTGGTGTTGGGGGGTATAGATCAGGTGGTGTCTATGGTGGTAGGGGTCCTTATGGTGGCTATGGTGGTGAATTTGGTGGGTATGGAGGATATGCTGGGGCCATGGGGCCTTATAGAGGAGACCCCTCCCTTGGGTATTCTGGTCGATATGGTGGTGGATTTAGCAGAGGCTATGACCTTGGTGGATATGGTGGACCTAGTGAGGGATATGGGGGATATGGTGGTGTTGGTTCTTCAGGTGGTGCCTATGGAAGTGGGTATGACGCTGGCTTGGGGGGCGGATATGGCAGCAGTGGCAGCAGTGGTGTTGGGGGTTCCTTTTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGTCTGGTCGATACCATCCTTACGGAAGATAG 1107 0.4806 MESPINDPSVDGETNDARSLGHREEEEDKSQPLTGDGASPGKIFIGGLARETTIAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFSDFFNHYGEVKDHQIMRDHSTNRSRGFGFITFETEDAVEDLLAKGNKIEFAGTQVEIKKAEPKKPNPPPASSKRYNDSRSSFGGGYGDAYDGFGGGFGVGGYRSGGVYGGRGPYGGYGGEFGGYGGYAGAMGPYRGDPSLGYSGRYGGGFSRGYDLGGYGGPSEGYGGYGGVGSSGGAYGSGYDAGLGGGYGSSGSSGVGGSFYGSRGGYGGAGSGRYHPYGR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0642 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 121 - -
Acco02g0642 368 Gene3D - 117 223 IPR012677 -
Acco02g0642 368 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 23 368 - -
Acco02g0642 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Acco02g0642 368 Gene3D - 41 116 IPR012677 -
Acco02g0642 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Acco02g0642 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Acco02g0642 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 122 242 - -
Acco02g0642 368 MobiDBLite consensus disorder prediction 201 223 - -
Acco02g0642 368 SUPERFAMILY RNA-binding domain, RBD 38 119 IPR035979 GO:0003676
Acco02g0642 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Acco02g0642 368 SMART rrm1_1 42 113 IPR000504 GO:0003723
Acco02g0642 368 SMART rrm1_1 130 203 IPR000504 GO:0003723
Acco02g0642 368 SUPERFAMILY RNA-binding domain, RBD 127 237 IPR035979 GO:0003676
Acco02g0642 368 MobiDBLite consensus disorder prediction 16 32 - -
Acco02g0642 368 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0642 Acco-ChrAcco02 4521703 4525040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0642 41 195 Eukaryotic Initiation Factors Gene Family AT1G71770 26.667 5.19e-10 59.3