Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0601 ATGGCTGCTACAGCAACGGCCTCTTCAGTGGGTCCAAGATATGCTCCGCATGACCCAACACTTCCTAAACCTTGGCGGGGACTTGTTGATGGTAAGACCGGTTATCTCTACTTTTGGAATCCTGAGACTAATGTCACCCAATATGAGAGGCCTACAAACTCTCCCCAGCCAAAGTCTTCTTCAGTGCCCAGTTCTTCAGTCCAGGTCCAACAGTCATCACAAGGAACTCGTAGGGACCACAGTCCTGATTTACATGATAGGTACGGTAGAGACAACGTTGGTGGATCAAATTCTGAAGCTGGATCTAGGAATCATCAGAATCCAAAAGGTGGGAGTCTCAGTTCTCATAACATTCCAAATGGAATACACTTGACCGGAAATGTTAGCTCTTCTATCAAAAACCATGGATTATCAGATGCAGAAGTTGGATTAACTCCAGAGTCTTATCGACGTCGCCATGAAATAACTGTGTCTGGGGATAATGTTCCTCCGCCTTTCACATCCTTTGGCTCTTCTGGTTTTCCGTCAGAGATTCTCAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCCATTCAGGCACAATCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCCAAAACAGGCTCTGGGAAAACCCTTGGATATTTAATTCCAGGATTCATCCATCTTAAACGTGTTGGCAATGACTCTAGATTGGGCCCCACTGTTCTGGTACTGTCACCTACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCAAAGTCATCCAGAATTTCTTGTGTATGTTTGTATGGGGGCGCACCAAAGGGTCCTCAATTGAGAGACATTGACCGAGGAGCTGATATTGTGGTTGCCACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCATCAGGTTTCTTACCTTGTACTAGATGAGGCCGATCGCATGCTAGATATGGGTTTTGAACCTCAAATCAGGAAGATTGTGAAGGAAGTGCCCACACGGAGGCAAACCCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTTAACATTGGCAATGTTGATGAGCTTGTTGCTAACAAGTCCATTACGCAGCATATAGAAGTATTGGCACCAATGGAAAAACACAGACGATTGGAGCAAATATTGCGGTCACAGGATCCAGGATCAAAAATAATTATTTTCTGTTCTACCAAGAAGATGTGTGATCAGCTTGCACGTAATCTTACACGCCAGTTTGGGGCTGCTGCCATTCATGGGGATAAATCCCAGTCTGAGAGGGACCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTTGTAGCAACTGATGTTGCAGCTCGAGGATTGGATATCAAAGATATTAGGGTTGTTGTCAATTATGACTTCCCTACTGGTGTGGAGGATTATGTCCATAGGATTGGAAGGACAGGGAGGGCAGGAGCCACTGGCTTGGCATACACGTTTTTTGGTGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATCTTGGAAGGTGCAAGTCAGCGAGTCCCACCAGAACTGCGTGATTTTGCATCACGTGGTGGTGGGATGAACAGATCCAGGCGATGGGGTTCTGGTGGTTATGGTGGTCGTGGGGGATGCAGTGATTCCGGATCTGGATATGGGGGAGGAGGTGGTGATTCTGGAAATGGAGGAAGGGGTGGATGGGGAGCCACTCCTGGTGGCAGAGGTGGTGGCCGTGGATTTGATTATGATTACCAGAGGAATGATCGTAGCCGCAGCCGAAGTCCCAACAGGCATGAAAAGGCAGCACCACCTTCCCAAGGTTTTAGTTTTCACCAGGCAATGACGGAACGTAAAGGGGGCGGTGATCATGACAAGAGCTTTGATCACAATAGAAACCGAAGTCGCAGCCCTGTTAAGCATGAGAGGGCACCATCTGGCCGTGAACGTTCTCCAGTCTATAGTTTTCATGAGATGATGATAAAACGTGGTCAATCAAGGCACACATTTAGTACTCACCGTACCAGTTCACCATCATCCCCCAGTGGTGGCATGTCCGACAGAAATCCCCGATCTCCTAGAAATAAGTTGGATGATGGGAGGTATGGTGGGGCTAATTCTTCCTACCTTGGAGAAGAGGAGGAAGGGATGATTCGTCATGATGACGATGCGGCATATGGGGTTGCGGATTAG 2259 0.4732 MAATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTNSPQPKSSSVPSSSVQVQQSSQGTRRDHSPDLHDRYGRDNVGGSNSEAGSRNHQNPKGGSLSSHNIPNGIHLTGNVSSSIKNHGLSDAEVGLTPESYRRRHEITVSGDNVPPPFTSFGSSGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGNDSRLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLEQILRSQDPGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGASQRVPPELRDFASRGGGMNRSRRWGSGGYGGRGGCSDSGSGYGGGGGDSGNGGRGGWGATPGGRGGGRGFDYDYQRNDRSRSRSPNRHEKAAPPSQGFSFHQAMTERKGGGDHDKSFDHNRNRSRSPVKHERAPSGRERSPVYSFHEMMIKRGQSRHTFSTHRTSSPSSPSGGMSDRNPRSPRNKLDDGRYGGANSSYLGEEEEGMIRHDDDAAYGVAD 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0601 752 Gene3D - 377 547 IPR027417 -
Acco02g0601 752 SMART ww_5 20 53 IPR001202 GO:0005515
Acco02g0601 752 MobiDBLite consensus disorder prediction 639 670 - -
Acco02g0601 752 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Acco02g0601 752 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Acco02g0601 752 MobiDBLite consensus disorder prediction 78 92 - -
Acco02g0601 752 MobiDBLite consensus disorder prediction 604 621 - -
Acco02g0601 752 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Acco02g0601 752 CDD WW 22 52 IPR001202 GO:0005515
Acco02g0601 752 Gene3D - 144 376 IPR027417 -
Acco02g0601 752 Gene3D - 16 68 - -
Acco02g0601 752 MobiDBLite consensus disorder prediction 692 711 - -
Acco02g0601 752 MobiDBLite consensus disorder prediction 1 28 - -
Acco02g0601 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 522 IPR027417 -
Acco02g0601 752 CDD SF2_C_DEAD 386 515 - -
Acco02g0601 752 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 118 545 - -
Acco02g0601 752 SMART helicmild6 426 506 IPR001650 -
Acco02g0601 752 FunFam probable ATP-dependent RNA helicase DDX17 135 375 - -
Acco02g0601 752 MobiDBLite consensus disorder prediction 95 130 - -
Acco02g0601 752 MobiDBLite consensus disorder prediction 46 77 - -
Acco02g0601 752 MobiDBLite consensus disorder prediction 735 752 - -
Acco02g0601 752 FunFam ATP-dependent RNA helicase RhlB 376 548 - -
Acco02g0601 752 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Acco02g0601 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
Acco02g0601 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
Acco02g0601 752 MobiDBLite consensus disorder prediction 540 752 - -
Acco02g0601 752 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Acco02g0601 752 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Acco02g0601 752 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Acco02g0601 752 SMART ultradead3 186 389 IPR014001 -
Acco02g0601 752 MobiDBLite consensus disorder prediction 46 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0601 Acco-ChrAcco02 4193252 4197284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0601 165 544 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 6.71e-65 219