Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0554 ATGGAGTCCGGCCGTCTTTTCTTCGGTTCCGCTTGCCACGGGAACATGCTGTTTCTCGGGAATGGTGATTCTGTTTATAGAGGAGGATCGATAATAAGCATGGAGGAAAGCTCAAAGAAACGACCATTTTTCAGCTCATCGGAGGAACTGTTCGATGACGAATATTACGATGAGCAGCTGCCGGAGAAGAAGCGACGCCTCACTCCCGAACAGGTGCTTCTGCTGGAGAAAAGCTTTGAGGAGGAGAACAAGCTGGAGCCGGAACGGAAGACAGAGCTGGCCAAGAAGCTGGGATTGCAGCCAAGGCAGGTGGCTGTGTGGTTCCAGAACCGTAGGGCCCGTTGGAAAACCAAGCAACTTGAAAGGGATTACGATGTTCTCAAGTCTTCCTACGATGCCCTCCTGTCAAAGTACGATTCCATTGTCAAGGACAATGAAAAGCTCAAATCGGAGGTGGTAGCCTTAAACGAGAAGCTTCTAGCTAAAGCGATGCCAGGAGAAGCGTTATCAGAAGAAAAAGCAGAGCCACTCATAATGGAACTAGCCCAAATGTCAACCCTGCCTTTCAACGTAAAGTTGGAGGACCGACTCAGCAGTGGGAGTGGTGGGAGTGCAGTGGTGGATGAGGATGCTCCCCAGCTTGTTGTGGACAGCGTTAATTCCTACTTTTCAGCTGAAAACTTTGAAGGATGCATGGCCAGAGTTGATAGGGCTCAGTCATCGTCGTCAGAGGATGGTAGCGACGATGGTGGGAGTTACTTCTCTGATGTGTTTGCGGCCCCTGAACCTGAGCACCAGAACCATGAGGAGGGAGAGGCGTTGTATTGGTGGGCGTGGTCTTAA 843 0.5077 MESGRLFFGSACHGNMLFLGNGDSVYRGGSIISMEESSKKRPFFSSSEELFDDEYYDEQLPEKKRRLTPEQVLLLEKSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDALLSKYDSIVKDNEKLKSEVVALNEKLLAKAMPGEALSEEKAEPLIMELAQMSTLPFNVKLEDRLSSGSGGSAVVDEDAPQLVVDSVNSYFSAENFEGCMARVDRAQSSSSEDGSDDGGSYFSDVFAAPEPEHQNHEEGEALYWWAWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0554 280 MobiDBLite consensus disorder prediction 236 268 - -
Acco02g0554 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 221 IPR045224 GO:0003700
Acco02g0554 280 FunFam Homeobox-leucine zipper protein HAT5 56 120 - -
Acco02g0554 280 CDD homeodomain 63 119 IPR001356 GO:0003677
Acco02g0554 280 Coils Coil 131 158 - -
Acco02g0554 280 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Acco02g0554 280 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Acco02g0554 280 SMART HOX_1 61 122 IPR001356 GO:0003677
Acco02g0554 280 Pfam Homeobox associated leucine zipper 118 159 IPR003106 GO:0006355|GO:0043565
Acco02g0554 280 SUPERFAMILY Homeodomain-like 54 120 IPR009057 -
Acco02g0554 280 Gene3D - 57 124 - -
Acco02g0554 280 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Acco02g0554 280 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Acco02g0554 280 Pfam Homeodomain 63 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0554 Acco-ChrAcco02 3881230 3883279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0554 1 279 Homeobox Transcription Factor Family AT3G01470 57.931 1.53e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco02g0554 Homeodomain 2.9e-18 CL0123