Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0542 ATGGATGATATAGAGGATGAGAAGCGAATAAGCAAAGCATCAGCTAGTGGTTGCAAAGCCTTTTGGAAGTGGCAAACAGTCCTCAGCTATTTAATCAATCTCAAAAAGCCTGCATCCTCTTCTTCTTCTGGAACCTGGGACCTCTTGAAAGTCGTTGCGTTTTCATTTTTCAAATTCCAGTTTCATGAGGTTTTGGGAAAGCGCAGCTGTGGTGGCCTTCCCAGAAACATAGCTGTTAAGAGCATGTTTCATGGGTCTCCCTTTATGATCTGTGGAATGCCAGAAAGCATGTATCGCAAGTGGTTTTTTAACCATACCCACTTGAAGATATCTTGGATTCATCATCAAATCCAGCAAAAAGATGGTTCCTTGAGCTACCCTCCTCCTGTTTTGCCTTCATCTTCTCCCCCATATCCCGGTGCTTTCCACAAAGAAACAGGATCTTCTTCCTCGTCTGGTACTAGAATTAGTCCTGCTGTTCTTTTCATTATAGTGATTCTGGCCGTGCTCTTTTTCATTTCTGGTCTTCTACACCTGCTTGTCAGATTTCTCATAAAGCGCCCATCTTCCTCAGCATCTGAATCTAATAGACACCAAGAAATCTCTACCTCCGATGCTCTTCAAAGACAACTCCAACAACTCTTCAATCTTCATGACTCTGGTCTGGATCAAGCTTTCATTGACGCACTTCCTGTTTTCCAGTATAAAGAGATAGTTGGTCTGAAAGAGCCATTTGACTGTGCTGTGTGCCTTTGTGAGTTCTCTGAGAAGGACAAGCTCAGATTGCTTCCAATGTGCAGCCATGCCTTCCATATTAATTGTATAGACACATGGCTTCTATCCAATTCCACATGTCCACTTTGTAGAGGAACCCTTTTGACTGCTGGGTTCTCAATTGAAAACCCCATGTATGATTTTGATGATTTAAGGGAAGAGGATGGTTGTAACGGTGAAAATGGGTTCCCAACTTTTAGACAAAAAACTGTTGAAATTGAAGAAACTGTAGAGAAAGGGGTGTTCCCTGTAAAACTTGGTAAATTCAGAAGGCTGAACGTGGAGGCAGGGGAGACAGGAGGAGGAGGAGTAGGAGAAACGAGTAGCAGTAATTTAGATGCAAGAAGATGTTACTCAATGGGATCTTACCAGTATGTGTTAGCCAATTCAGTCCTCCGAATTGCATTGAACCATGACCATCAAGGCCACGAGGCAAGGTTTACAAAAGGACCAGAACAATCTGAGAAGCTTTCTATGGAGGAAGCCAAGAAGATCAGAAGTGTGAACAAAGGTGAGAGCTATTCTGTTTCCAAGATCTGGCAGTGGTCCAAGAAGAGTAAGTTTTCTACTTCGTCCGAAGAAGATCAAGCGAGCATGCCATCTTCTCTTAAAACAGACCTTCCATGGATGAGAAAAACAGAAGGGACATGA 1425 0.4295 MDDIEDEKRISKASASGCKAFWKWQTVLSYLINLKKPASSSSSGTWDLLKVVAFSFFKFQFHEVLGKRSCGGLPRNIAVKSMFHGSPFMICGMPESMYRKWFFNHTHLKISWIHHQIQQKDGSLSYPPPVLPSSSPPYPGAFHKETGSSSSSGTRISPAVLFIIVILAVLFFISGLLHLLVRFLIKRPSSSASESNRHQEISTSDALQRQLQQLFNLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLTAGFSIENPMYDFDDLREEDGCNGENGFPTFRQKTVEIEETVEKGVFPVKLGKFRRLNVEAGETGGGGVGETSSSNLDARRCYSMGSYQYVLANSVLRIALNHDHQGHEARFTKGPEQSEKLSMEEAKKIRSVNKGESYSVSKIWQWSKKSKFSTSSEEDQASMPSSLKTDLPWMRKTEGT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0542 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 295 IPR013083 -
Acco02g0542 474 SMART ring_2 247 288 IPR001841 -
Acco02g0542 474 FunFam RING-H2 finger protein ATL46 209 294 - -
Acco02g0542 474 Pfam Ring finger domain 246 289 IPR001841 -
Acco02g0542 474 ProSiteProfiles Zinc finger RING-type profile. 247 289 IPR001841 -
Acco02g0542 474 MobiDBLite consensus disorder prediction 442 474 - -
Acco02g0542 474 SUPERFAMILY RING/U-box 226 294 - -
Acco02g0542 474 CDD RING-H2_EL5-like 246 289 - -
Acco02g0542 474 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 151 438 - -
Acco02g0542 474 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0542 Acco-ChrAcco02 3824316 3829894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0542 144 453 C3H Transcription Factor Family AT2G18650 41.127 5.32e-61 203