Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0527 ATGGGCAAAAACATGGAGTTTCAGGACGCTGTTAGTTTCGTGGTCCACGGATCGTTACAGAAAAATCGAGTTTCTCACAAAGCAACAGAAGCAGACGCCGTCACTTCCGGCCGGAAATGGAAGATCTTCCACCGGTCATCGTCGACTTTCGCTTCCAAGCAGAAAAAACCTGAAAAGAAACAGCCCCCGGAAGAATTTCTCTGCCCCATATTAGGGTCTCTCATGGCAGACCCCATCATCGTCTCCTCAGGCCACACCTTCGAGCGAGTCTCTGTTCAAGCTTGTAAAACTTTAAACTTCACACCACGCCTCTCCGATGGCTCCACGCCCGATTTATCTACTGTAATTCCCAACCTTGCCCTTAAATCTGCCATTGTTAAATGGTGCCACAACTCCGCCAACCTGCTCCCCGAGCCGCCTGATGTAGCTTCTACTGAGAAGTTCGTGCTTAGTCTGATGACGAAAAACCAGAAGACAGATTCAAGCATCCAGAACAAAACAGAATCGCAGAAGGTAGTAATCACCGAGGAACAGCTGATTCAAGGAATGAAGGACAACCCACCTGTGAATTTCAATCACGCAGCGACCGAGGTCAATCGACGGCCAGCTCATCCTTACTGGAACTCAGAGGAATCGGAGGGTTCCTCTCCTGCATCTCCGCCTATGCAACTCTCAACTCGACCAAGCTGCTACTCCTCTACTTCATCCTCAGAAATCGAAGTCATTGTTCATTGCTCACCTGAAGAAGAGAACATCTTAGCCAAGTTAAGAAGCTCACAAGCCTCCGAGATCGAAGAAGCTGCTATTTCACTAAGAAAACTTACGAAGACTAGAGAGGATAGGAGGGCCCAAATCTGCAGTCCTCGGTTACTCTCTGTCCTTCGATTGTTGATCATGTCCAAGTACACTAATATTCAGGTGAACGCGGTCGCAGCTCTGGTGAATCTCTCATTGGAGAAAGTGAACAAAGTAAAGATACTCCGCTCCGGAATCGTTCCCCCGTTGATTGACGTATTGAAAGGAGGATCTCCTGAGGTGCAGGAACACGCTTCCGGCGCAATCTTCAGCTTGGCCATTCAGGACGATAACAAGACTGCCATCGGCGTGCTGGGTGCCCTGCCGCCGCTGCTCCACTTGCTCCAATCCGAGAATGAGCGAACGCGGAATGACTCGGCGCTCGCACTGTACCACCTCTCCCTTGTACAGAGCAACCGGACCAAGATGATAAAACTCGGGTCGGTTCCGACCCTGACGAGCATGTTAAAGTCGGGTAAAATGAGGGGTCACGTGCTACTCATACTATGCAACTTGGCATCTTGTGGCGATGGCCGGGCGGCGATGTTAGATGCGCAGGCGGTGGAGTGCTTGGTGGGGCTGCTAGGCGGCAGCGAATTGGGTTCCGGGTCGACCCGGGAGAGCTGCGTGGCGGTGTTGTACGCAATGAGTCACGGCGGGTTGAGGTTTAAAGCGGTGGCGAGGGCGGCGGGGGTGGTGGAGGTGTTGAAGAAGGAGGAGAAGGCGGGAAGCGAGAGGGCGAGGGAGAAGGTGAAGAGGATATTGGAGATGATGAGGGTAAAGGAGGAAGCCGAAGAAGACGACGTCGACTGGGAGGGGCTTCTTGACTCGGGGCTGTGTAGTCTGAGTTACTTGCCCGAGTTATGA 1662 0.5229 MGKNMEFQDAVSFVVHGSLQKNRVSHKATEADAVTSGRKWKIFHRSSSTFASKQKKPEKKQPPEEFLCPILGSLMADPIIVSSGHTFERVSVQACKTLNFTPRLSDGSTPDLSTVIPNLALKSAIVKWCHNSANLLPEPPDVASTEKFVLSLMTKNQKTDSSIQNKTESQKVVITEEQLIQGMKDNPPVNFNHAATEVNRRPAHPYWNSEESEGSSPASPPMQLSTRPSCYSSTSSSEIEVIVHCSPEEENILAKLRSSQASEIEEAAISLRKLTKTREDRRAQICSPRLLSVLRLLIMSKYTNIQVNAVAALVNLSLEKVNKVKILRSGIVPPLIDVLKGGSPEVQEHASGAIFSLAIQDDNKTAIGVLGALPPLLHLLQSENERTRNDSALALYHLSLVQSNRTKMIKLGSVPTLTSMLKSGKMRGHVLLILCNLASCGDGRAAMLDAQAVECLVGLLGGSELGSGSTRESCVAVLYAMSHGGLRFKAVARAAGVVEVLKKEEKAGSERAREKVKRILEMMRVKEEAEEDDVDWEGLLDSGLCSLSYLPEL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0527 553 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Acco02g0527 553 FunFam RING-type E3 ubiquitin transferase 247 523 - -
Acco02g0527 553 Gene3D - 246 522 IPR011989 -
Acco02g0527 553 MobiDBLite consensus disorder prediction 205 231 - -
Acco02g0527 553 SUPERFAMILY RING/U-box 53 137 - -
Acco02g0527 553 Pfam U-box domain 63 131 IPR003613 GO:0004842|GO:0016567
Acco02g0527 553 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Acco02g0527 553 PANTHER U BOX DOMAIN-CONTAINING 47 524 - -
Acco02g0527 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 413 IPR000225 GO:0005515
Acco02g0527 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 136 IPR013083 -
Acco02g0527 553 MobiDBLite consensus disorder prediction 209 231 - -
Acco02g0527 553 SMART arm_5 319 359 IPR000225 GO:0005515
Acco02g0527 553 SMART arm_5 360 400 IPR000225 GO:0005515
Acco02g0527 553 SMART arm_5 401 439 IPR000225 GO:0005515
Acco02g0527 553 SMART arm_5 440 483 IPR000225 GO:0005515
Acco02g0527 553 SMART arm_5 278 318 IPR000225 GO:0005515
Acco02g0527 553 SUPERFAMILY ARM repeat 251 520 IPR016024 -
Acco02g0527 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 330 367 IPR000225 GO:0005515
Acco02g0527 553 FunFam RING-type E3 ubiquitin transferase 43 134 - -
Acco02g0527 553 Pfam Kinesin-associated protein (KAP) 305 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0527 Acco-ChrAcco02 3729064 3730725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0527 57 543 U-box Gene Family AT5G40140 56.389 0.0 520