Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0496 ATGCGGAAAAATCCGGCTTCGCCTGGTAGCCGAGGAGAGCCTATCTCGTCTTCTAAAGCTAAAACCCTAAATTCCACCGGTTCCCTTCAATACGTGGTACCCCAGTTCGTTTCTAAGTTTCTCTGGCGGAAAATGAGTAGACGGACAAGCAGGACTGTCTACGTTGGGAATTTGCCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTATTTGTCAAGTATGGACACATAACTCACATTGACTTGAAGGTTCCACCCAGACCCCCTGGTTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGTCATCGGTTACGGGTAGAGCCTGCACATGGTGGACGTGTTCATTCATCATCCAGAGATCGACATAGTAGTCACAGTAATGGTCGAGGTGGACGTGGGGTCTCTAGGCGCTCTGAGTACCGTGTATTGGTCACTGGGTTGCCCTCCTCTGCCTCCTGGCAGGATCTTAAAGATCACATGAGGAAAGCAGGAGATGTTTGTTTTTCTCAAGTTTTTCATGATGGTAGAGGAACAACTGGGATTGTTGATTACACAAACCATGATGACATGAAATATGCTGTCAAGAAGCTTGATGACTCTGAGTTTCGGAATGCATTTTCCAGAGCTTATGTTCGCGTGAGGGAACATGATTCAAGGCGGGACTCCTCTAGAAGCCCAAGTCGTGGCCGATCTTATTCTAGGGGGCGAAGTTACAGCCGCAGCCGTAGTTACAGCCGAGGGCGTAGTCTGAGCAAATCTCCAAAGGGTAAATCTTCTCAGCGTTCACCTGCTAGATCTCCTTCAAGATCTGTTTCACGCTCACGTTCTCCCTCGAAGTCGAGGTCCCGCTCTTTGTCAGGATATGGATACTTGGAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAATCAAGGAGATCATGGATTGCAATTTTATAGCGGGATGTCTTGTGTGCTAAAGCAAGTGGGATTTGGAAATCACCATCATTGA 1083 0.4691 MRKNPASPGSRGEPISSSKAKTLNSTGSLQYVVPQFVSKFLWRKMSRRTSRTVYVGNLPGDIREREVEDLFVKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRVHSSSRDRHSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRAYVRVREHDSRRDSSRSPSRGRSYSRGRSYSRSRSYSRGRSLSKSPKGKSSQRSPARSPSRSVSRSRSPSKSRSRSLSGYGYLEQTGNWKLGTWWDLVQLPATQFVVEIGNQGDHGLQFYSGMSCVLKQVGFGNHHH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0496 360 CDD RRM1_SF2_plant_like 52 122 - -
Acco02g0496 360 MobiDBLite consensus disorder prediction 124 154 - -
Acco02g0496 360 MobiDBLite consensus disorder prediction 229 301 - -
Acco02g0496 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 120 IPR000504 GO:0003723
Acco02g0496 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 219 IPR000504 GO:0003723
Acco02g0496 360 CDD RRM2_SF2_plant_like 155 230 - -
Acco02g0496 360 SMART rrm1_1 52 122 IPR000504 GO:0003723
Acco02g0496 360 SMART rrm1_1 156 227 IPR000504 GO:0003723
Acco02g0496 360 SUPERFAMILY RNA-binding domain, RBD 49 223 IPR035979 GO:0003676
Acco02g0496 360 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 46 298 - -
Acco02g0496 360 Gene3D - 155 232 IPR012677 -
Acco02g0496 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 126 IPR000504 GO:0003723
Acco02g0496 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 233 IPR000504 GO:0003723
Acco02g0496 360 MobiDBLite consensus disorder prediction 1 21 - -
Acco02g0496 360 Gene3D - 42 154 IPR012677 -
Acco02g0496 360 FunFam serine/arginine-rich splicing factor SR34A-like 155 232 - -
Acco02g0496 360 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 45 154 - -
Acco02g0496 360 MobiDBLite consensus disorder prediction 243 301 - -
Acco02g0496 360 MobiDBLite consensus disorder prediction 124 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0496 Acco-ChrAcco02 3533972 3538839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0496 52 239 Eukaryotic Initiation Factors Gene Family AT4G34110 24.873 1.25e-06 48.5