Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0470 ATGCGTGCTGATGTTATACATTGCGGTGGCCTCACTGTGAAGTTGCTATCCGGGTGGGAGGATGTGGCGGCGGTAGGGAGTTTGAAGAATCCTAGGAAGAGTCCATCAGATTTTGGGCTTCAGCCTTCAGAATTTCAAGCTATTGCAGATGAATTCATAACCAGCCCTGTTCCTTCAGATACCATATGCAACATCACCCTAGACCCATCTTATTGCAGAGCCGTGCTTCCGAGGCAAGACGCTCAAGTGCAAGACTCTGGCAGGCTCTCCATTCAAAAATCGCTATCTCAAACCCGTAAGCTTTCCAACTTTGCCAAGTCCTATCTTGTCAACCATTCAACTTTGACGCAAGGCACAATCCGTGGAATTCATGACTGCATATTTCTCTCTGAACTTAACGTGGAGCACTTATCCAAGTCCAATGAGATTACTTGTTTACGCGGACTAATGAGCACCACTTCCGATTTTAGCTCTAATTTTGGTCAACTCTCTGATGACACTAAGCTCTACAGTCTGTCTCTGGCTATGTTCACAAAGGGATGTCAAATCGAACGAGATCCATATACAACTCAATTAGAGGTAGAAGGAAGCATCAAGACGGGTGAAAATGACGAAGAAGGTGTTCTGATTAGTGACATGGTGGTCGTGAGTCAAGACGGAAGTGGAAATTTCTCCACCATTAACGATGCCGTCGCTGCTGCTCCCACCAACAACAATGTAAGTGATGGGTATTTCTTGATTTATATCACAGAAGGTGTTTATGAAGAATACGTATCCATCCCCATCATCAGGCCCTTCCTCATGATGATCGGAGATGGAATCAATCGCACAATTATCACAGGCAACCACAGTATCGGCGACGGCTGGACAACATTCAATTCACCAACATTTGCTGTGGTAGCACCGGGGTTTGTAGCAGCAAGTATGACACACACCAGGGCCAAGCAAGTTTCAAGCAGTTGCAATGAGAGGTGGAGCAGACCAATCCACGGACGAACAGACCCAAATCAGAACACAGGCATTTCCATCCATAACTGCACCATTAAAGCCTCCGATGACTCAGCTGCGAGTGGCGGTGGCGTGAAGACTGATCTTGGGAGGCCACGGCAGCTGCATTCGAGGACGATTGTGATGGATTCGTTCTTGGATAGTCTGATTGATCCTGCAGGGTGGTCTATATGGAGTGGCGATTTCGCACTTGACACTTTGTATTATGCAGAGTTTGATAACAAGGGACCTGGAGCGCAGCTGATACTAGGCGATGATTGGTTGCCTCGGACTCGAGTTTCTTATCTTGGTGAACTCTTCACCACAAACTAA 1320 0.4689 MRADVIHCGGLTVKLLSGWEDVAAVGSLKNPRKSPSDFGLQPSEFQAIADEFITSPVPSDTICNITLDPSYCRAVLPRQDAQVQDSGRLSIQKSLSQTRKLSNFAKSYLVNHSTLTQGTIRGIHDCIFLSELNVEHLSKSNEITCLRGLMSTTSDFSSNFGQLSDDTKLYSLSLAMFTKGCQIERDPYTTQLEVEGSIKTGENDEEGVLISDMVVVSQDGSGNFSTINDAVAAAPTNNNVSDGYFLIYITEGVYEEYVSIPIIRPFLMMIGDGINRTIITGNHSIGDGWTTFNSPTFAVVAPGFVAASMTHTRAKQVSSSCNERWSRPIHGRTDPNQNTGISIHNCTIKASDDSAASGGGVKTDLGRPRQLHSRTIVMDSFLDSLIDPAGWSIWSGDFALDTLYYAEFDNKGPGAQLILGDDWLPRTRVSYLGELFTTN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0470 439 Gene3D - 208 316 IPR012334 -
Acco02g0470 439 Gene3D - 317 435 IPR012334 -
Acco02g0470 439 SMART PMEI_2 54 176 IPR006501 GO:0004857
Acco02g0470 439 PANTHER PECTINESTERASE 60 311 - -
Acco02g0470 439 Pfam Pectinesterase 330 417 IPR000070 GO:0030599|GO:0042545
Acco02g0470 439 Pfam Pectinesterase 214 312 IPR000070 GO:0030599|GO:0042545
Acco02g0470 439 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 179 IPR035513 -
Acco02g0470 439 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 143 IPR035513 -
Acco02g0470 439 SUPERFAMILY Pectin lyase-like 210 431 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0470 Acco-ChrAcco02 3376862 3379389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0470 59 415 Carbohydrate Esterase AT1G02810 35.573 1.47e-85 271