Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0462 ATGATTATCAATATTTACGTATTTCACTCAATGCTTTGGCAGCTGCAACAGGGAGGGGAGGGTGAGAGGAGAATGGTGTCACTGAAACTTCAGAAGCGGCTCGCCGCTAGCGTCCTCAAGTGCGGCGGAGGCAAAGTTTGGCTCGACCCTAATGAAGTCAATGAAATATCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTGGTCAAGGATGGTTTCATCATCCGGAAGCCAACCAAGATTCACTCACGTTCACGTGCCCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGAAAGGGTACCAGAGAGGCACGACTTCCGACAAAAATTCTTTGGATGAGAAGAATGCGTGTGCTCAGACGCTTGCTCCGAAAGTACAGGGAATCAAAGAAAATTGATAAGCATATGTACCATGACATGTACATGAAAGTTAAGGGTAATGTGTTCAAGAATAAGAGAGTCCTAATGGAGAGCATTCACAAATCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTGAGTGATCAGTTTGAGGCTAAGCGTGCAAAGAACAAGGCAAGCCGGGAAAGGAAATTCGCAAGGAGGGAGGAGCGACTGGCTCATGGTCCTGGAGAAAAACCTGCTGCAGCACCTACCACACAACCTGCTCCAGCATCTCAGGCAGCCCCAGCATCAAAGAAATCCAAGAAGTGA 711 0.4796 MIINIYVFHSMLWQLQQGGEGERRMVSLKLQKRLAASVLKCGGGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAHGPGEKPAAAPTTQPAPASQAAPASKKSKK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0462 236 ProSitePatterns Ribosomal protein L19e signature. 31 50 IPR023638 -
Acco02g0462 236 Gene3D - 81 212 - -
Acco02g0462 236 Pfam Ribosomal protein L19e 28 169 IPR000196 GO:0003735|GO:0005840|GO:0006412
Acco02g0462 236 CDD Ribosomal_L19e_E 28 191 IPR033935 GO:0003735|GO:0022625
Acco02g0462 236 Gene3D - 26 80 IPR015972 GO:0003735|GO:0005840|GO:0006412
Acco02g0462 236 PANTHER 60S RIBOSOMAL PROTEIN L19 25 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Acco02g0462 236 MobiDBLite consensus disorder prediction 81 109 - -
Acco02g0462 236 MobiDBLite consensus disorder prediction 168 209 - -
Acco02g0462 236 MobiDBLite consensus disorder prediction 168 236 - -
Acco02g0462 236 SMART Ribosomal_L19e_2 27 170 IPR000196 GO:0003735|GO:0005840|GO:0006412
Acco02g0462 236 FunFam Ribosomal protein L19 25 80 - -
Acco02g0462 236 SUPERFAMILY Ribosomal protein L19 (L19e) 27 168 IPR035970 GO:0003735|GO:0005840|GO:0006412
Acco02g0462 236 Hamap 50S ribosomal protein L19e [rpl19e]. 27 173 IPR000196 GO:0003735|GO:0005840|GO:0006412
Acco02g0462 236 FunFam Ribosomal protein L19 81 216 - -
Acco02g0462 236 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0462 Acco-ChrAcco02 3335447 3337452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0462 25 236 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.434 5.09e-126 353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0462 02 3335447 3337452 Acco02g0462 02 3335447 3337452 ECH