Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0446 ATGGCCAAAGCCAATGCCAAGGCAAAATCCGCTTCCGCTCCTCACCACCCTCCCTATTTCCATATGATATCGGAAGCCATTTCCGCATTGAAAGACCGCACCGGTTCCAGTCAGCAAGCAATTGCCAAGTTCATCGAGGACAAACACAAGTCACATCTGCCCCCAAATTTCAGGACACTGCTCTCTGTTCAACTCAAGAAGTTTGTCAAGTCGGAGAGGCTGTTCAAGGTGAAGAATTCCTTCAAGATCTCCTCCTCGGAGAAGAACAAGACCTCCAAATCACGTAAGAAGGGTGCGACGCCTGCGCAGAAGGCTGCCAAGAAGATCACAGAGAAGGGGCTGAAGACCAAGAGGCTGAGTCACGTGAAGACGCCGGAGGCACTCAAGAAGGCCCACAAGGACACGAAGAAGAAGTCGATAGTCTCGTCGGCTGGGAAAGCCCGAAAAGTGAAGCGTCTGAGTCTGGTTAAAACCCCCGACGCAATGAAGAAGAAGAAGACCAAAGTTACCCCTATGAAGAGGAAGGCTACATCCATAACCGTCAAGTCTTCTAGGCCCGCGAAGAAGGCTAGGAAATAG 579 0.5095 MAKANAKAKSASAPHHPPYFHMISEAISALKDRTGSSQQAIAKFIEDKHKSHLPPNFRTLLSVQLKKFVKSERLFKVKNSFKISSSEKNKTSKSRKKGATPAQKAAKKITEKGLKTKRLSHVKTPEALKKAHKDTKKKSIVSSAGKARKVKRLSLVKTPDAMKKKKTKVTPMKRKATSITVKSSRPAKKARK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0446 192 Gene3D - 11 97 IPR036388 -
Acco02g0446 192 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco02g0446 192 CDD H15 14 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco02g0446 192 PRINTS Histone H5 signature 164 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Acco02g0446 192 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Acco02g0446 192 PRINTS Histone H5 signature 142 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Acco02g0446 192 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Acco02g0446 192 PANTHER HISTONE H1 5 175 - -
Acco02g0446 192 MobiDBLite consensus disorder prediction 108 141 - -
Acco02g0446 192 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco02g0446 192 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Acco02g0446 192 SUPERFAMILY "Winged helix" DNA-binding domain 13 97 IPR036390 -
Acco02g0446 192 MobiDBLite consensus disorder prediction 82 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0446 Acco-ChrAcco02 3239237 3239907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0446 17 83 Single Myb Histone (SMH) Gene Family AT1G72740 43.284 1.18e-11 60.1