Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0425 ATGGAAGAAGTGGTTTTGTTGGTCGATGATTTGAAATTACTTTCCGCGACTCCTCGCTGCAGAATATGTCACGATGAAGAATTTGAGAGCTCCGAAAGCCTTGAAGCACCTTGTGCTTGTTCTGGCACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAACACAACCTGTGAATTATGTCTTCAGCAATACGAACCTGGATTCACAGCAGTTCCAAAGAAATCTCAGATAAATGACGCGGCTATGACAATCAGAGATAGCCTGCAAATTCCAAGGGACGAAGAACCGTTAAGCGCAAGATCAGAGGGAAGTGAAGAAGGAGTGACTACAACAGAAGGAGATTACTCAGAGTGCACCTCTACTGCTGATAGAAGTGCTTCTTGCTGCCGATCACTGGCTTTATTTTTTACACTCGTTCTGCTTGTGAGACATCTTTTCGTGGTGCTTACGAGTGCAAAGGAAGATTACCCATTTTCGCTTTTAACGGTGTTTCTACTAAAAGCAAGCGGGATCATTCTACCCATGTACATAATAATGAAGGCGATAGGAGGCATATTTGGGAGTATTCAACGTCACTACCAGGATTCTGACGACGACGCATCAATATCCGACAGTGAAGATGAAGATAGCGAACTGATTCATGATACCTCTGTTCCCCATCAATAA 687 0.4367 MEEVVLLVDDLKLLSATPRCRICHDEEFESSESLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCELCLQQYEPGFTAVPKKSQINDAAMTIRDSLQIPRDEEPLSARSEGSEEGVTTTEGDYSECTSTADRSASCCRSLALFFTLVLLVRHLFVVLTSAKEDYPFSLLTVFLLKASGIILPMYIIMKAIGGIFGSIQRHYQDSDDDASISDSEDEDSELIHDTSVPHQ 228
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0425 228 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Acco02g0425 228 SMART ringv_2 19 68 IPR011016 GO:0008270
Acco02g0425 228 MobiDBLite consensus disorder prediction 100 123 - -
Acco02g0425 228 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
Acco02g0425 228 SUPERFAMILY RING/U-box 18 72 - -
Acco02g0425 228 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Acco02g0425 228 CDD RING_CH-C4HC3_MARCH 20 67 - -
Acco02g0425 228 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Acco02g0425 228 MobiDBLite consensus disorder prediction 203 228 - -
Acco02g0425 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 77 IPR013083 -
Acco02g0425 228 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 197 IPR033275 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Acco02g0425 Acco-ChrAcco02 3102791 3105156 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0425 20 67 C3H Transcription Factor Family AT2G37950 40.816 2.16e-06 45.1
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0425 02 3102791 3105156 Acco06g0376 06 2345584 2347543 CCT
Acco02g0425 02 3102791 3105156 Acco02g0425 02 3102791 3105156 ECH