Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0424 ATGAAGTTGACCCTAATCAAGAATTTATTGAAAGATCACATTAATCAATCGAAGTTCAGCTTTAGAGAATATCGTAATGGTAATCTTGATTGTGATTTAACTGCCAAGTCTGATGGAGGCGAAGACAACGGAGTTCGTCATCTTAGACTTCAAAACAAAACCTTTATGGTGAAGGCAGGATGGAGTTCAATCAATAACAAAGATGCCCTGTGGACTAGAGTCATAAGAAGTAAATATAACTGCGGCAATGACTTGATTCCTAGTAAGCTCCCAGTATGGAAAACGTACTGTCAAAGAAAGTTAATTTTGATGAGAGGTACACCAGAGTTCATCAAATCTAGGAAATCCAATCCAATGAGTTTTCGTTTATCAATGACCTTCCGCTCTTCATCTGCTATCTTCTTTCTTCTGGCTCTTGTTGCGATGATAGTTGTCTTATCATTGACGCCATGGTGGTATGTTATGATCACACGCATTGAGCAGCGCGTTAATTCAAACTCTCAGAATTTTCTCTTGGAATTACAAGATGAAATTGATCACTCTGCTAAATTATTACCCCCCTTGAAATCAGCATCAGCCAACTTGGCACGAATTCTAAGTTCACCCTTCAACAAGACGACTAATATCTCATTCTCTGACATTGAGACCAAAGTGGCTCCCGTGTTATATCAAGCATTTGGGATGATTCCTCAGTTGTCCGAAATCTCATACATTGGGATGGATGGTCTATTTTTCTCATACCACAAAGAACATGATCAAAATCTTGCAGTGTTCTCAAACTCTTCCTTTTCTTCAATATCGAGCGCTTCACAAATCATTTACTACGTCCAACCTGTAAATCTTGACACAGGAGGATTATATGGTGAAGCCGTAACATATAAGCACCCTGCTAATACAAGGTGGACCCAGGAAGCGGCCAATAATTCTGACGGATATGCCTCATTGGGATACAAGTGGAGCGACAATAATAAGATTTTATATCTTAATTTGTTCAGAATCTCAAGAACAGGATTTATCTCATTCGGACTTCCAGCAACAACAATCACAGACTTTGTCACCCCCACTAGGCGTCAAGGTGCAAGCTTGTATTTGGCTTCTAAAGATGGAAAAATGCTTCTACAAGGAATCCAACATGCCCATATAGTATTCCATGACGATACAGCTTCCTTCTATTTAGTGAAACCAAATGGTGTTCTATTGGATCATCAGGGAACTGTCTCATGTAAGGCTGATGCAATTGCTTCTGTTTTGAAAATTGGCGATACTCAATATTTAACACGCTGCTCATCAATTGATATAATGGGAGTTGAATCGGTGTACGTCTTGGCTATCCCCCAAAATGGATTGGTGACCTATGTGCATGAGAGGAGAAAACGGGGTTTGGTGATGATGAGTACAATGATAGCGATGATATTGGTCTCTATCTTTAGTTTTCTTTTGTTGAATGCAATAATTGGTCGGCGAGAGATGCATTTGTGTGTCTCTCTCATCAAACAAATGGAAGCCACTCAACAAGCAGAGAGGAAGAGTATGAATAAGAGCCTTGCATTTGCTAGTGCTAGCCATGATATTCGTGCTGCTCTTGCTGGCCTTACTGGTTTGATAGAGATGTCCAATGAAGAAGTTATCCCTGGTTCTGAACTAGAGGCCAATTTAAAACAGATGGGTGCTTGCACTGAAGACTTGCTAGGGCTATTGAATTCTATTCTTGATACAAGTAAAATTGAGGCGGGGAAAATGCAGCTTGATGAAGAGGAATTTGATCTATCCCAAGTCATAGAAGAAGCAATTGATTGGTACTATCCTACAGCAATGAAAAAAGGTGTTGATCTCGTCTTGGACCATTGTAATGGTTCAGTTATCAGATATTCGCATGTCAAAGGTGACAAGAGAAAGCTTAAACAAGTTTTGTATAATTTAGTAAGCAATGCTGTTAAATTTACAAATGAGGGACATATAGCAGTTCGAGCTTGGGCTCGAAAGCCAAGTTTCCAGAACTCAATAATGGCTTCTAAAAGATACAATTTTATCAAGCACTTGCCATGCTTATTTTACAAGAAAAATGAATCAAATGCAGAAATAGAAGTCAGAAAAGCAATCCAACAAGATCCAAACTTGTTGGAGTTTGTGTTCGAAGTAGATGATACTGGAAAAGGAATTCCCAAAGAGAAGCACAAGTCAGTATTTGATAATTATGTCCAAGTCAACGAAACTGCTTCAGGTCAAGGAGGCACTGGTTTGGGACTTGGTATTGTGCAATCACTGGTACGTTTGATGCATGGGGATATTGAAATTGTGGAAAAGGAAATAGGTGAAAAAGGATCATGCTTTAGATTCAATATTATCCTTCACGTTTGTGACACAGTCACAGGTGTTAATAACAATAGAGAAGATATTGAATTAGGAGGTGACATAAATCTCAATCAACTTCAAGCACAAGATATAAACAACCCTGGTTCTGGTTCTAGCATTTGTTCCCCCAGCCCAAAATTACCGATTTTTGCCTCTAGTAGGTCAGGGGCTTCTAGCATTATTCTTTTGATACAAAATGAAGAGCGGCGAAGGACTACTCGAAGGTTCATTGAGAGCTTAGGGATTAGAGTTAAGGTTGTGAAGCAGTGGGAACATTTGTCTCATACTCTTAAGAAGATCAGGCAAAAGGGGCATAATTCTAGCCAGAGCTCTATAGGAACATCAGATACTAGTTCTAGGTCTACATCTCAAAATTCCAATTCCAAGGCCAAAGGATTTCCTTTGAGTGATACAGATGGAATTTACAATATGCCTTTGACTTCTAATATGTTAGAAGATAGAGCTTCTCAGGGTTTGGTTCTGCTTGTGATTGATGCAATTGCAGGACCCTTTTCAGAACTTAGCAGAACGGTGTTTGCATTCAAAAAAGACCTAGGGAGTCCTTGCAGGGTGGTTTGGTTAAATAAGCCACTTGTTTATGGAGACAGTTTCAAAGCACTTGATGAGGATGCATTAGATCCTGATGACATTATCTTGTCCAAGCCATTTCATGGCAGTCGTTTGTTTGAAATTATAAAGCTTCTTCCTGAGTTTGGAGGTAGTTCAACTAATATATCCAGATTTGGAAAAGTAAGGAGGGACATTTTTCACAACAGACTTTGCAAACCATTCAAAGATTCCCACATATCAAAATATCAGTCACCTATATCAGACACAGGAGAATTTTCCTCAGCTAATGCAACCTCATTACAAGACTATGATAGTTCATCAAGGAGGGATCAACTATATTCTTCTAGGAGGTCCAAAGCAAGGAATTCTCAGATCGACCACAAAGAGATACAAGAATGCAATGATTCAACCAATGAAAAGCCCTTCGGTGGCAAGAGAATTTTGATTGTTGAGGACACTGGATATCTACGCATGATAGCTTTTAAGACTTTGATACAGCTAGGTGCAAGTGCAGCTAATGTGAATGAATGCGAGAATGGGGAAGAAGCGGTGAATCTAGTTGAAGAGAGTTTAAAAGGGGCTTTTCCTTTTGATTACATTTTAATGGACTGCGAGATGCCGGTAATGAATGGATTTGAGGCAACAAAGCAGATAAGGAAGATGGAGAAGAGGTATGGGGTTCACATACCTATCTTGGCCTTAACAGCTCATTCGTCAGGGGAAGAGATCCACATGACCAAGGAGGCAGGAATGGACGCTCACTTAGAAAAGCCACTAAGAGCACACCATTTACTGGCTACCATTAAAAACATACACAATAGTACAGACTGA 3753 0.3954 MKLTLIKNLLKDHINQSKFSFREYRNGNLDCDLTAKSDGGEDNGVRHLRLQNKTFMVKAGWSSINNKDALWTRVIRSKYNCGNDLIPSKLPVWKTYCQRKLILMRGTPEFIKSRKSNPMSFRLSMTFRSSSAIFFLLALVAMIVVLSLTPWWYVMITRIEQRVNSNSQNFLLELQDEIDHSAKLLPPLKSASANLARILSSPFNKTTNISFSDIETKVAPVLYQAFGMIPQLSEISYIGMDGLFFSYHKEHDQNLAVFSNSSFSSISSASQIIYYVQPVNLDTGGLYGEAVTYKHPANTRWTQEAANNSDGYASLGYKWSDNNKILYLNLFRISRTGFISFGLPATTITDFVTPTRRQGASLYLASKDGKMLLQGIQHAHIVFHDDTASFYLVKPNGVLLDHQGTVSCKADAIASVLKIGDTQYLTRCSSIDIMGVESVYVLAIPQNGLVTYVHERRKRGLVMMSTMIAMILVSIFSFLLLNAIIGRREMHLCVSLIKQMEATQQAERKSMNKSLAFASASHDIRAALAGLTGLIEMSNEEVIPGSELEANLKQMGACTEDLLGLLNSILDTSKIEAGKMQLDEEEFDLSQVIEEAIDWYYPTAMKKGVDLVLDHCNGSVIRYSHVKGDKRKLKQVLYNLVSNAVKFTNEGHIAVRAWARKPSFQNSIMASKRYNFIKHLPCLFYKKNESNAEIEVRKAIQQDPNLLEFVFEVDDTGKGIPKEKHKSVFDNYVQVNETASGQGGTGLGLGIVQSLVRLMHGDIEIVEKEIGEKGSCFRFNIILHVCDTVTGVNNNREDIELGGDINLNQLQAQDINNPGSGSSICSPSPKLPIFASSRSGASSIILLIQNEERRRTTRRFIESLGIRVKVVKQWEHLSHTLKKIRQKGHNSSQSSIGTSDTSSRSTSQNSNSKAKGFPLSDTDGIYNMPLTSNMLEDRASQGLVLLVIDAIAGPFSELSRTVFAFKKDLGSPCRVVWLNKPLVYGDSFKALDEDALDPDDIILSKPFHGSRLFEIIKLLPEFGGSSTNISRFGKVRRDIFHNRLCKPFKDSHISKYQSPISDTGEFSSANATSLQDYDSSSRRDQLYSSRRSKARNSQIDHKEIQECNDSTNEKPFGGKRILIVEDTGYLRMIAFKTLIQLGASAANVNECENGEEAVNLVEESLKGAFPFDYILMDCEMPVMNGFEATKQIRKMEKRYGVHIPILALTAHSSGEEIHMTKEAGMDAHLEKPLRAHHLLATIKNIHNSTD 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0424 1250 MobiDBLite consensus disorder prediction 882 918 - -
Acco02g0424 1250 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 500 580 IPR036097 GO:0000155|GO:0007165
Acco02g0424 1250 Gene3D - 1096 1249 - -
Acco02g0424 1250 SMART REC_2 1119 1242 IPR001789 GO:0000160
Acco02g0424 1250 Pfam Response regulator receiver domain 1121 1242 IPR001789 GO:0000160
Acco02g0424 1250 MobiDBLite consensus disorder prediction 887 917 - -
Acco02g0424 1250 SMART HisKA_10 512 578 IPR003661 GO:0000155|GO:0007165
Acco02g0424 1250 PRINTS Bacterial sensor protein C-terminal signature 743 761 IPR004358 GO:0016310|GO:0016772
Acco02g0424 1250 PRINTS Bacterial sensor protein C-terminal signature 709 723 IPR004358 GO:0016310|GO:0016772
Acco02g0424 1250 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 567 781 IPR036890 -
Acco02g0424 1250 ProSiteProfiles Histidine kinase domain profile. 519 785 IPR005467 -
Acco02g0424 1250 Gene3D - 580 789 IPR036890 -
Acco02g0424 1250 Gene3D - 499 579 - -
Acco02g0424 1250 CDD REC_hyHK_CKI1_RcsC-like 1121 1242 - -
Acco02g0424 1250 MobiDBLite consensus disorder prediction 1083 1098 - -
Acco02g0424 1250 PANTHER TWO-COMPONENT HISTIDINE KINASE 123 1243 - -
Acco02g0424 1250 SMART HKATPase_4 628 785 IPR003594 -
Acco02g0424 1250 MobiDBLite consensus disorder prediction 1071 1098 - -
Acco02g0424 1250 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 628 781 IPR003594 -
Acco02g0424 1250 SUPERFAMILY CheY-like 1115 1246 IPR011006 -
Acco02g0424 1250 ProSiteProfiles Response regulatory domain profile. 1120 1246 IPR001789 GO:0000160
Acco02g0424 1250 CDD HisKA 513 574 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0424 Acco-ChrAcco02 3094499 3102526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0424 132 1247 Histidine Kinase Gene Family AT2G47430 38.674 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco02g0424 HATPase_c 7.2e-27 CL0025