Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0409 ATGTCGAAACGGAAGTTCGGGTTCGAAGGCTTTGGCATCAACCGCCAATCGACCTATAATTTTGAGAGATCTCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATTACGAAGACACCGACCTTGACAACATCGAATATGACGATAGTGATGCTCCCAAAGACGGAAATAATGGCAACAGCGACGATATTGACCCCCTTGATGCTTTCATGGAAGGGATTCACGAGGAAATGAAAGCCGCGCCACCTCCTCAGCTAAAAGAGAAGGCAGAGGACAGGTTTAGAGATGATGACGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTAGGGTTGACCTTGGCATCCGAGGCTCTGAAAGCTGGGTATGACTCCGATGAAGAGGTTTATGCAGCTGCAAAAGCTGTAGACGCGGGAATGATAGAGTATGACTCTGATGACAACCCCCTTGTTGTTGACAAGAAGAAAATTGAGCCTATTCCTGCTTTGGACCACAGTTCCATTGAGTACGAGCCCTTTAACAAGGATTTTTACGAGGAGAAACCTTCAATATCAGGTATGAGCGAGCAAGATGTTGCAGAATACAGGAAGAGCTTGGCCATTCGTATATCAGGTTTTGATGTTCCAAAGCCAATTAAGACGTTTGAAGACTGTGGTTTCCCTCCACAACTTATGAATGCCATAAAGAATCAGGGCTATGAGAAACCAACATCAATACAGTGCCAAGCTTTACCAGTTGTGCTCTCTGGCAGTGATATAATCGGCATAGCAAAAACTGGTTCTGGTAAAACTGCTGCCTTTGTCCTTCCTATGATTGTGCATATCATGGATCAACCTGAACTTCAGAAGGAAGAAGGTCCAATAGGAGTAATTTGTGCTCCCACTAGAGAACTGGCGCATCAGATATACTTAGAGGCCAAGAAATTTGCAAAACCCTATGGGTTACACGTCTCTGCTGTCTATGGTGGAATGTCAAAACTGGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCAGTTACAATGATGAGAGCAACTTACTTGGTGCTTGATGAGGCTGATAGGATGTTTGACCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATCAGGCCTGATCGCCAAACTGCACTTTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACTGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTTGTTCAAGTGATTTCTTCTGATACAGAGAAAATGCCATGGCTCCTTGAGAAGCTGCCTGGAATGATTGATGAAGGTGATGTCTTAGTATTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGAATCACAACTGTCACAAAGAAGCTTTAAAGTGGGAGCTCTGCATGGTGATAAAGATCAAGCTGCTCGAATGGATATCTTGCAGAAGTTTAAATCTGGCGCCTACCATGTTCTTATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGACATGGATATGCATGTGCATCGCATTGGCAGAACAGGTCGTGCTGGTGACAAAGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGCTTTGCTGGTGAGCTGGTTAATAGCTTAATAGCAGCTGGACAGAATGTGTCTATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGATCCAAACGTGATGCAAGGAAAGGAGGTGGGAAAAAAGGTAAGGGGAGGGGAGGGGGTGGCGGCAGAGGTGTGCGGGGTGTGGATTATGGCTTGGGTATTGGATACACTCCGGAGTCCAATAACCCTCCACCTAGCACAACAAGTCGATCTGCCGCTGTAAACTCACTGCGGACAGGGATGATGGCACAATTTAGGAGCAACTTTGTTGCTGCTTCATCAGACTCTCAAAACCAAAGCTTCAGTAACAGTACAAGTATGCCTGCTAATAAGAGACCCGCCCTCCCTGGCTTCATATCTGGTGGGTCAATTGGTGGCGATGTAAATAATAATCAGACTCCTGCTTCATCCAGACCAGCTACTTCGTCTGTAAATGCTAGTAGTCACAACTCTGGAGTTGATGCTGGTCAGAGGAATACCGACAGCTCCAGGCCTAGAGAAAGGAGGAGGCAGTCAGGTTGGGACAGGTAG 2295 0.4571 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDSDAPKDGNNGNSDDIDPLDAFMEGIHEEMKAAPPPQLKEKAEDRFRDDDEDDPMESFLRAKKDVGLTLASEALKAGYDSDEEVYAAAKAVDAGMIEYDSDDNPLVVDKKKIEPIPALDHSSIEYEPFNKDFYEEKPSISGMSEQDVAEYRKSLAIRISGFDVPKPIKTFEDCGFPPQLMNAIKNQGYEKPTSIQCQALPVVLSGSDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGLHVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKAVTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTALFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVQVISSDTEKMPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLSQRSFKVGALHGDKDQAARMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGRGVRGVDYGLGIGYTPESNNPPPSTTSRSAAVNSLRTGMMAQFRSNFVAASSDSQNQSFSNSTSMPANKRPALPGFISGGSIGGDVNNNQTPASSRPATSSVNASSHNSGVDAGQRNTDSSRPRERRRQSGWDR 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0409 764 CDD SF2_C_DEAD 440 572 - -
Acco02g0409 764 SMART ultradead3 241 443 IPR014001 -
Acco02g0409 764 Gene3D - 430 606 IPR027417 -
Acco02g0409 764 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Acco02g0409 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 428 IPR014001 -
Acco02g0409 764 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 190 602 - -
Acco02g0409 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 431 IPR027417 -
Acco02g0409 764 MobiDBLite consensus disorder prediction 712 747 - -
Acco02g0409 764 MobiDBLite consensus disorder prediction 607 660 - -
Acco02g0409 764 FunFam probable ATP-dependent RNA helicase DDX17 184 431 - -
Acco02g0409 764 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Acco02g0409 764 MobiDBLite consensus disorder prediction 16 31 - -
Acco02g0409 764 SMART helicmild6 481 562 IPR001650 -
Acco02g0409 764 MobiDBLite consensus disorder prediction 16 70 - -
Acco02g0409 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 600 IPR027417 -
Acco02g0409 764 CDD DEADc_DDX42 233 429 - -
Acco02g0409 764 MobiDBLite consensus disorder prediction 84 106 - -
Acco02g0409 764 Pfam DEAD/DEAH box helicase 246 417 IPR011545 GO:0003676|GO:0005524
Acco02g0409 764 MobiDBLite consensus disorder prediction 684 698 - -
Acco02g0409 764 Gene3D - 184 429 IPR027417 -
Acco02g0409 764 Pfam Helicase conserved C-terminal domain 466 562 IPR001650 -
Acco02g0409 764 MobiDBLite consensus disorder prediction 748 764 - -
Acco02g0409 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 457 602 IPR001650 -
Acco02g0409 764 MobiDBLite consensus disorder prediction 684 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0409 Acco-ChrAcco02 2993394 2998132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0409 222 578 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 3.41e-62 213
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0409 02 2993394 2998132 Acco02g0409 02 2993394 2998132 ECH