Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco02g0361 | ATGGCTGCGATTAAGACGAATAAGTTAGCGGTCTTGGCATTGGCAAGTGACACCACAATTGCAGACGTGTTCCCTCGTTTCCTTGGCCGCCATTTGCTTTCCCTCCGGCATATTTGCAACAGGTGGAGCACCAGGATGACCGGAGCTGAAACTAAAAAGTCCACTGCAAAACAATCTGGTGGGAAGAAGAAAGAGGTTAAGAAAGAGACAGGTTTAGGGCTTTCAAATCGAAAGGCAGACAACTTTGGGGAGTGGTACTCTGAGGTAGTTGTCAATGGGGAAATGATTGAGTACTATGACATTTCTGGATGTTACATTCTGAGGCCATGGGCAATGTCAATCTGGGAGGTGATGCAAGCCTTCTTTGACGCAGAGTTAAAGAAAATGAAAGTCAAGAACTGCTACTTCCCTTTGTTTGTGTCTCCTGGCGTTTTGCAAAAGGAGAAGGATCATGTTGAGGGATTTGCACCAGAGGTTGCTTGGGTGACAAAGTCTGGGGAAACTGATCTGGAGATTCCTATTGCTATCCGTCCAACTAGTGAAACTGTCATGTATCCGTACTACTCCAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAATGGTGCAATGTGGTTAGATGGGAGTTCAGTAATCCCACACCATTCATCAGGAGCCGTGAGTTTCTTTGGCAGGAAGGGCATACTGCTTTTGCAACAAAGGAGGAGGCAGATGCAGAGGTCCTTGATATATTGGAATTGTATAGGCGTATATATGAAGAATACCTAGCAATTCCTGTCATAAAGGGTAAGAAAAGTGAGCTGGAGAAGTTTGCTGGTGGACTTTACACAACAAGTGTTGAGGCATTTGTTCCCAACACTGGTCGTGGCATACAAGGTGCAACTTCTCATTGTCTTGGCCAAAATTTTGCTAAAATGTTTGAGATAAATTTTGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCATGGGCTTATAGCACTCGAACTATTGGGGTCATGGTGATGGTTCATGGGGATGACAAAGGGCTTGTGCTGCCACCTAAAGTAGCATCAGTGCAAGTCATTGTGATTCCAGTGCCTTATAAAGATGCAGATACTCAAGGTATTCTTGATGCCTGCTCTGCCACTGTGAATACTTTGTGTGAAGCAGGTATTCGTGCTGAGTCAGACTTTAGAGATAACTATTCTCCTGGTTGGAAGTATTCACACTGGGAAATGAAAGGTGTTCCCTTAAGGATTGAAATCGGGCCAAAGGATTTGGCAAATAAGCAGGTGCGTGCTGTTCGACGTGATAATATGGGAAAAATAGACATACCCATGGAAGATTTGGTCCATCAAGTCCAAGATTTGCTGCACATTATTCAACAAGGCCTATTTGATATGGCCAAACAAAAACGAGATGCATGCGTTCAGGTTGTACATACTTGGGATGAATTTGTGGATGCATTGAGCCAACGGAAAATGATATTGGCTCCTTGGTGTGATGAGGAGCCTGTGGAAGTAGATGTGAAAGCAAGGACGAAGGGTGAGATGGGAGCAGCTAAGACGCTTTGTAGTCCCTTTGATCAACCGGAACTCCCTGAAGGTACCAAGTGCTTTGCATCAGGAAAGCCGGCTAAAAAGTGGACATACTGGGGCAGAAGTTACTAG | 1668 | 0.4466 | MAAIKTNKLAVLALASDTTIADVFPRFLGRHLLSLRHICNRWSTRMTGAETKKSTAKQSGGKKKEVKKETGLGLSNRKADNFGEWYSEVVVNGEMIEYYDISGCYILRPWAMSIWEVMQAFFDAELKKMKVKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGETDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLDILELYRRIYEEYLAIPVIKGKKSELEKFAGGLYTTSVEAFVPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGILDACSATVNTLCEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNMGKIDIPMEDLVHQVQDLLHIIQQGLFDMAKQKRDACVQVVHTWDEFVDALSQRKMILAPWCDEEPVEVDVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPAKKWTYWGRSY | 555 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco02g0361 | 555 | Hamap | Proline--tRNA ligase [proS]. | 75 | 555 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | SUPERFAMILY | C-terminal domain of ProRS | 478 | 555 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | SUPERFAMILY | Class II aaRS and biotin synthetases | 80 | 346 | IPR045864 | - | |
| Acco02g0361 | 555 | MobiDBLite | consensus disorder prediction | 49 | 70 | - | - | |
| Acco02g0361 | 555 | FunFam | bifunctional glutamate/proline--tRNA ligase | 353 | 473 | - | - | |
| Acco02g0361 | 555 | CDD | ProRS_anticodon_zinc | 348 | 555 | - | - | |
| Acco02g0361 | 555 | PRINTS | Prolyl-tRNA synthetase signature | 133 | 151 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | PRINTS | Prolyl-tRNA synthetase signature | 174 | 185 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | PRINTS | Prolyl-tRNA synthetase signature | 204 | 212 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | PRINTS | Prolyl-tRNA synthetase signature | 214 | 225 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | Pfam | Anticodon binding domain | 359 | 455 | IPR004154 | - | |
| Acco02g0361 | 555 | Gene3D | Bira Bifunctional Protein; Domain 2 | 75 | 352 | IPR045864 | - | |
| Acco02g0361 | 555 | NCBIfam | proline--tRNA ligase | 77 | 555 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 114 | 352 | IPR006195 | - | |
| Acco02g0361 | 555 | Gene3D | - | 476 | 555 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 175 | 340 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Acco02g0361 | 555 | FunFam | Bifunctional glutamate/proline--tRNA ligase | 74 | 352 | - | - | |
| Acco02g0361 | 555 | PANTHER | PROLYL-TRNA SYNTHETASE | 49 | 555 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | SMART | ProRS_C_1_2 | 482 | 555 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Acco02g0361 | 555 | Gene3D | - | 353 | 473 | IPR036621 | - | |
| Acco02g0361 | 555 | FunFam | Proline--tRNA ligase, cytoplasmic | 476 | 555 | - | - | |
| Acco02g0361 | 555 | SUPERFAMILY | Class II aaRS ABD-related | 347 | 473 | - | - | |
| Acco02g0361 | 555 | CDD | ProRS_core_arch_euk | 81 | 342 | IPR033721 | - | |
| Acco02g0361 | 555 | MobiDBLite | consensus disorder prediction | 56 | 70 | - | - | |
| Acco02g0361 | 555 | Pfam | Prolyl-tRNA synthetase, C-terminal | 482 | 555 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco02g0361 | Acco-ChrAcco02 | 2662663 | 2670782 | Dispersed/Wgd |