Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0354 ATGTGGATCTTTTGAGGGGTTTGTTCCAAGAAGTACATCAATGATGTTTCTTGCCTTAAGGTGGCGGCTTCTTTGAGTCACATTATTATTCCACAGATGGGTAAAGCCTCTAGCTCTTCTTCTTCCTCTATCAGTAGCAACAACCACCCACTCATTTCAACTGCTTCATCTCTCAGCCGCCTCCATAACTCTGATTACCTTCCCACAGATCTCAGGCTTGGTCTTAGCATTTCAGCAACCGAACACGTTGGCTCTTCTGTTTCAAGGGGGCAACCAACAGATTGGATCCCAAACCAGCGTGGTTATGGGGCAGAAGTAAATGACTGTGGGGATCATAGCAGCATGTTTGTAAAGGTGTACATGGAAGGCATTCCAATAGGCAGGAAACTCAATCTGGTAGCTCACGATGGCTACCATGAGTTAGTGAGGACTCTGGAAAACATGTTTGACACTACCATTCTCTGGGGGACGGGGATGGATGGGGTGCAGCCAGAGAGGTGCCATGTGCTAACATACGAAGACGAAGAAGGAGATTTGGTGATGGTGGGCGATGTTCCTTGGGAAATGTTCCTATCAACAGTGAAGAGATTGAAGATAACGAGGGTAGACGCATTCGGGTGTTAA 624 0.4696 MWIFXGVCSKKYINDVSCLKVAASLSHIIIPQMGKASSSSSSSISSNNHPLISTASSLSRLHNSDYLPTDLRLGLSISATEHVGSSVSRGQPTDWIPNQRGYGAEVNDCGDHSSMFVKVYMEGIPIGRKLNLVAHDGYHELVRTLENMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0354 207 ProSiteProfiles PB1 domain profile. 114 204 IPR000270 GO:0005515
Acco02g0354 207 Pfam AUX/IAA family 110 201 IPR033389 -
Acco02g0354 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 68 202 IPR003311 GO:0005634|GO:0006355
Acco02g0354 207 Gene3D - 109 206 - -
Acco02g0354 207 SUPERFAMILY CAD & PB1 domains 111 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0354 Acco-ChrAcco02 2605915 2608796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0354 117 199 B3 DNA Binding Superfamily AT4G23980 39.759 3.77e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco02g0354 AUX_IAA 7.8e-29 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0354 02 2605915 2608796 Acco06g0312 06 1957719 1958546 CCT