Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0340 ATGGAAAGGCTAGCGTTGAGTATTGTGATATTGTTGGTGGGTTTATCTACCACACAAGTAAGAACAGCATCCGGGGCTGGCTGGCTACAAGCTCATGCAACTTTCTATGGAGGAAGCGACGCCTCAGGCACAATGGGTACTTGTAAACATGAATATAATGCAGGAGGTGCATGTGGTTATGGGAATCTGAACACGGATGGTTATGGGACAAAAACGGCAGCGTTAAGCACAGCTCTGTTCAACGACGGGAAGGCGTGCGGTGGATGCTATCAGATAGTGTGTGACGCAAGACAAGTGCCACAGTGGTGCCTGAGAGGGACTTCCATCACAATCACTGCCACCAATTTCTGTCCTCCAAACTACGCTCTTCCCAGCGATAATGGCGGATGGTGCAATCCTCCCAGACCTCATTTTGATATGTCTCAGCCTGCTTTTGAGACTATCGCCAAGTACCGCGCCGGAATTGTTCCCATTTTCTACAGACGGGTTGGCTGCAAGAGAAGTGGAGGCATCAGGTTTACTATAAATGGGAGAGACTATTTTGAGCTAGTTCTTGTTAGCAACGTGGGCGATGCTGGAGACGTATCACGTGTTTGGGTCAAAGGATCAAGAATGAGTAACTGGGAGATCATGTCCAGGAACTGGGGTGCTAACTGGCAGAGCCTAAGCTATCTCAACGGTCAAAGCTTGTCTTTCAGAGTCCAACTCAGCACCGGAAAATATCTCACAGCTTATAACGTGGCACCCTCTAACTGGAAATTTGGCCAGTCCTTCGTCAGCAACATTCAGTTTTGA 795 0.4843 MERLALSIVILLVGLSTTQVRTASGAGWLQAHATFYGGSDASGTMGTCKHEYNAGGACGYGNLNTDGYGTKTAALSTALFNDGKACGGCYQIVCDARQVPQWCLRGTSITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFETIAKYRAGIVPIFYRRVGCKRSGGIRFTINGRDYFELVLVSNVGDAGDVSRVWVKGSRMSNWEIMSRNWGANWQSLSYLNGQSLSFRVQLSTGKYLTAYNVAPSNWKFGQSFVSNIQF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0340 264 FunFam Expansin 170 264 - -
Acco02g0340 264 SUPERFAMILY Barwin-like endoglucanases 27 188 IPR036908 -
Acco02g0340 264 SMART dpbb_1 72 160 IPR007112 -
Acco02g0340 264 Pfam Lytic transglycolase 72 160 IPR009009 -
Acco02g0340 264 Gene3D - 170 264 IPR036749 -
Acco02g0340 264 Gene3D - 14 166 IPR036908 -
Acco02g0340 264 Pfam Expansin C-terminal domain 171 249 IPR007117 -
Acco02g0340 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 170 IPR007112 -
Acco02g0340 264 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Acco02g0340 264 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Acco02g0340 264 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Acco02g0340 264 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Acco02g0340 264 PRINTS Expansin signature 246 262 IPR002963 GO:0009664
Acco02g0340 264 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Acco02g0340 264 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Acco02g0340 264 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Acco02g0340 264 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Acco02g0340 264 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Acco02g0340 264 PRINTS Expansin signature 109 119 IPR002963 GO:0009664
Acco02g0340 264 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Acco02g0340 264 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Acco02g0340 264 CDD DPBB_EXPA_N 27 165 - -
Acco02g0340 264 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
Acco02g0340 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Acco02g0340 264 PANTHER EXPANSIN-A15 9 260 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0340 Acco-ChrAcco02 2526258 2527896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0340 4 264 Expansin Gene Family AT4G01630 70.115 1.90e-139 390