Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0323 ATGTCTGCTTTTGATGAGGACATCCCTAATGTTGATGATGGAGATCGGCGTGGTTGCCGTGGGGTTGATGGCAATAACGATGATGACGATGATGAAGAAGTAAAGAAGGGGCTAAGAAAATATGGATTTCAAAAAGATATTGGAAAGGCGAAGCAAGTGGTCCTGCGTCAATTTTCGAAAGCCAAGAAACAACTCCACAATAGAAGGCGCAAGAAAGCTCTTCGTACTTCTTCTGAGTCTGGAGCTGCTATTGTAAACAGAGCTTCAGGTTACTATGCAGAGAGAGAAACAAGCAGGTTTGATGGATATCAGAAGAATTCATTGGTAATAGAGAAGTATGACAGTATGAGGCTGCTTCTTTCAATTTGTTTGGCCAGATTGCCGTCTTCCCCTGATTTACTTGATTTGGGAAGCACCTCTGGATTCGATATTATCACCGCCATGATTCAGAGATTTGCAGCTTACATCATTTTAAAGCAAATTTTCCTGCCAAAACTGTTGGCTCTCATCCCTTCGAAACCAGCCAACCTGTTTGAAGTGGACAGCACGCAAGCCCAGAAAGCACATGATACGATAGAACAAATTAAAAGAACTCCAAAAAAGGGTCAGATTAGCTTAGCCATTTTATTTATCTTGCCAGGTGTAACGAAGGTGAAAATGTCCTCCTCAAGACCTAGCCAGTCATCCAGTAACTCGGGAAGATCAAGACATACTGCTCGAATTATTGCTCAGACCACTGTAGATGCAAAACTACATGCAAATTTTGAGGAGTCTGGTAGCTCTTTTGACTACTCAAACTCGGTGCGTATCTCTGGTACAGTAACTGGAGAGCAACAACCAAGATCTGACCGAGTGACAACGGCTTACCTCCATCACATACAGAAAGGCAAGCTGATCCAGCCTTTTGGGTGCTTGCTAGCCTTAGATGAGAAAACATGCAAGGTGATTGCATATAGTGAGAATGCTCCGGAAATGTTGACCATGGTTAGTCATGCTGTCCCTAGTGTAGGTGACAACCCTGTCCTTGGCATTGGCACTGACATAAGAACCATATTCACTGCTCCAAGTGCTTCTGCGTTGCAGAAAGCGTTAGGATTTGGGGAAGTTTCACTTCTCAACCCCATTCTTGTCCATTGCAAGACCTCAGGGAAACCCTTTTATGCAATTATCCATCGTGTGACCGGAAGCTTGATAATCGATTTTGAGCCAGTCGAGCCTTTTGAAGTTCCAACGACTGCAGCTGGTGCCCTTCAATCTTATAAACTTGCTTCCAAAGCAATCAATACATTGCAATCTTTGCCTAATGGGAGTATGGAAAGGCTATGTGATACGATGGTTAAAGAAGTTTTTGAACTCACAGGTTACGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTAATTGCCGAGATCATAAAGCCAGGTTTGGAGCCATATCTGGGTTTGCATTACCCAGCCACTGACATTCCACAGGCTGCACGTTTTTTATTTATGAAGAATAAGGTACGTATGATAGTAGATTGTCGTGCAAGGCAAGTGAAGGTGCTTCAAGATGAAAAACTTCCATTTGAGTTAACCTTGTGCGGTTCAACCTTGAGGGCCCCTCATAGTTGCCATTTGCAATATATGGAGAACATGAATTCCATTGCTTCCCTGGTTATGGCAGTGGTGGTCAATGACAATGATGAAGATGTGGACAGCTCTGATTCTATCCAGACACAAAAGAGAAAGAGACTTTGGGGTTTAGTAGTTTGTCATAATACTACACCAAGGTTTGTTCCTTTTCCTCTTCGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAATAAAGAATTAGAGTTAGAAAACCAAATTGTTGAGAAAAACATCCTGCGCACCCAGACACTTCTATGTGATATGCTGATGCGAGATGCACCCCTAGGCATTATATCACAGAGCCCAAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAACAAGGTATGGGGACTAGGAGTAACGCCAAGCGAATCCCAGATCCGAGAGATATCTATATGGCTCTCTGAGAACCATATGGATTCCACAGGTTTAAGTACAGATAGCCTGGCTGAAGCAGGGTTACCAGGTGCTCTTGCTCTTTGTGATGTAGTATGTGGGATGGCAGCTGTGAGAATATCTTCGAAAGATATGGTTTTCTGGTTTCGATCGCATACTGCTGCAGAAATTCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAACAGGATGACAATAGGAGGATGCATCCAAGATCATCATTTAAAGCTTTCCTTGAAGTTGTGAAGTCAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATCCATTCCTTGCAGTTAATCCTGAGGAATGCATTTAAAAATACAGAGAGTATGGATGTAAATACCAAAGCAATTAACACTAGATTGAGCGATTTGAAGATTGAAGGTATGCAGGAATTGGAGGCAGTGACTAGTGAGATGGTTCGGTTAATTGAAACAGCAACAGTGCCAATTTTGGCAGTTGACGTTGATGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTGACGGGTCTTCCAGTTGATGCAGCAATTGGGAAGCATCTACTCACGCTAGTTGAGGATGCTTCAATTGATAGGGTCAAGAAGATGCTGGATATGGCACTGCAAGGTGAAGAAGAGCAGAACGTCCAATTTGAGATCAAAACACATGCATCTAAGATTGATTCTGGTCCTATCAGGTTGGTTGTTAATGCTTGCGCAAGTAGAGACATACGAGATAACGTAGTGGGGGTTTGTTTCGTGGCCCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACCCGAATTGAAGGCGATTACAAGGCGATTGTCCAGAATCCTAACCCATTGATTCCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCCGCGATGATCAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGACAAAATGCTCTTGGGGGAGATCTTTGGAACTCATGCAGCTTGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTCAATTTTGGAATTGCACTAAATAAAGCCATGACCAGTTTGGAAACTGAGAAGGTTGCTTTTGGCTTTTTTGCTCGGAATGGGAAGTATGTGGAGTGCCTTCTTTCTGTGAGTGAGAAGTTGGATATAGAGGGTACAGTTACTGGAGTTTTCTGCTTCCTGCAGCTTGCTAGCCCAGAGTTGCAACAAGCATTACATATTCAGCGGCTATCTGAACAAACTGCATTGAAGAGACTAAAAGCTTTAACTTACATGAAAAGGCAGATACGAAATCCTTTAGGAGGGATTGTATTCTCTCGTAAAATGTTGGAGGGTACTGAGTTGGGAACTGAACAGAAACAACTTCTGCACACTAGTTCCCTGTGCCAGCGCCAACTCAGCAAAGTTGTCAATGATTCTGATCTTGACCGCATCATTTATGGGTACTTAGATCTGGAGATGGTTGAATTTACTCTGCATGAAGTATTGGTTGCCTCTATCAGTCAGGTAATGACAAAGAGCAATGAAAAGGGCATCAGAATAGTGAACGAGGTGGCAGAGCAGATCATGACAGAAACATTGTATGGTGACAGTCTCAGGCTTCAACAAGTCTTGGCTGACTTCTTATCGATGTCCGTGACTTTTACACACTCCGGAGGCAAGGTGGTTGTTGCAGCCTTTTTAACCAAAGATCAGTTGGCACAATCTGTCCATCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGAAGTGGGATTCCAGAAGCATTACTAAACCAGATGTTTGGAGGCGATGGACAAGAATCTGAGGAGGGTATTAGCCTGCTTGTTAGTAGAAAACTGGTAAAGCTCATGAACGGTGATGTCCGCTATCTGAGGGAAGCAGGCAAATCATCCTTCATTATAACTGTCGAACTCGCTTCAGCCCAGACAGAAATCGAGGGCTTAAATTTTGAAAATAAGATCACGAAGTGA 4062 0.4318 MSAFDEDIPNVDDGDRRGCRGVDGNNDDDDDEEVKKGLRKYGFQKDIGKAKQVVLRQFSKAKKQLHNRRRKKALRTSSESGAAIVNRASGYYAERETSRFDGYQKNSLVIEKYDSMRLLLSICLARLPSSPDLLDLGSTSGFDIITAMIQRFAAYIILKQIFLPKLLALIPSKPANLFEVDSTQAQKAHDTIEQIKRTPKKGQISLAILFILPGVTKVKMSSSRPSQSSSNSGRSRHTARIIAQTTVDAKLHANFEESGSSFDYSNSVRISGTVTGEQQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDNPVLGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVEPFEVPTTAAGALQSYKLASKAINTLQSLPNGSMERLCDTMVKEVFELTGYDRVMAYKFHEDDHGEVIAEIIKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARQVKVLQDEKLPFELTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDNDEDVDSSDSIQTQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNKVWGLGVTPSESQIREISIWLSENHMDSTGLSTDSLAEAGLPGALALCDVVCGMAAVRISSKDMVFWFRSHTAAEIRWGGAKHEPGEQDDNRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKNTESMDVNTKAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVDAAIGKHLLTLVEDASIDRVKKMLDMALQGEEEQNVQFEIKTHASKIDSGPIRLVVNACASRDIRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMIKLTGWKREEVMDKMLLGEIFGTHAACCRLKNQEAFVNFGIALNKAMTSLETEKVAFGFFARNGKYVECLLSVSEKLDIEGTVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKALTYMKRQIRNPLGGIVFSRKMLEGTELGTEQKQLLHTSSLCQRQLSKVVNDSDLDRIIYGYLDLEMVEFTLHEVLVASISQVMTKSNEKGIRIVNEVAEQIMTETLYGDSLRLQQVLADFLSMSVTFTHSGGKVVVAAFLTKDQLAQSVHLANLELSITHAGSGIPEALLNQMFGGDGQESEEGISLLVSRKLVKLMNGDVRYLREAGKSSFIITVELASAQTEIEGLNFENKITK 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0323 1353 NCBIfam PAS domain S-box protein 843 959 IPR000014 -
Acco02g0323 1353 Gene3D PAS domain 982 1094 - -
Acco02g0323 1353 SUPERFAMILY GAF domain-like 628 805 - -
Acco02g0323 1353 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1170 1332 IPR036890 -
Acco02g0323 1353 Gene3D - 625 798 IPR043150 -
Acco02g0323 1353 Coils Coil 617 637 - -
Acco02g0323 1353 ProSiteProfiles Histidine kinase domain profile. 1120 1337 IPR005467 -
Acco02g0323 1353 Pfam GAF domain 437 620 IPR003018 GO:0005515
Acco02g0323 1353 SMART gaf_1 437 630 IPR003018 GO:0005515
Acco02g0323 1353 SUPERFAMILY GAF domain-like 417 617 - -
Acco02g0323 1353 PRINTS Phytochrome signature 352 374 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 735 754 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 768 786 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 858 873 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 931 948 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 650 670 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 839 855 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 537 558 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 452 471 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 PRINTS Phytochrome signature 951 971 IPR001294 GO:0006355|GO:0009584
Acco02g0323 1353 SMART HKATPase_4 1225 1337 IPR003594 -
Acco02g0323 1353 Pfam Phytochrome region 633 808 IPR013515 GO:0006355|GO:0009584
Acco02g0323 1353 Gene3D PAS domain 293 540 - -
Acco02g0323 1353 ProSitePatterns Phytochrome chromophore attachment site signature. 537 546 IPR013516 -
Acco02g0323 1353 SUPERFAMILY PYP-like sensor domain (PAS domain) 983 1089 IPR035965 -
Acco02g0323 1353 CDD PAS 980 1091 IPR000014 -
Acco02g0323 1353 Gene3D PAS domain 830 967 - -
Acco02g0323 1353 ProSiteProfiles PAC domain profile. 909 965 IPR000700 -
Acco02g0323 1353 SUPERFAMILY PYP-like sensor domain (PAS domain) 293 405 IPR035965 -
Acco02g0323 1353 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 437 610 IPR016132 -
Acco02g0323 1353 SUPERFAMILY PYP-like sensor domain (PAS domain) 842 949 IPR035965 -
Acco02g0323 1353 Gene3D - 1176 1340 IPR036890 -
Acco02g0323 1353 FunFam Phytochrome 625 756 - -
Acco02g0323 1353 Gene3D - 418 781 IPR029016 -
Acco02g0323 1353 FunFam Phytochrome 832 963 - -
Acco02g0323 1353 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1225 1335 IPR003594 -
Acco02g0323 1353 SMART pas_2 968 1037 IPR000014 -
Acco02g0323 1353 SMART pas_2 838 904 IPR000014 -
Acco02g0323 1353 PANTHER TWO-COMPONENT HISTIDINE KINASE 1107 1335 - -
Acco02g0323 1353 SMART HisKA_10 1113 1177 IPR003661 GO:0000155|GO:0007165
Acco02g0323 1353 MobiDBLite consensus disorder prediction 9 24 - -
Acco02g0323 1353 Pfam PAS fold 288 404 IPR013654 GO:0006355
Acco02g0323 1353 CDD PAS 847 953 IPR000014 -
Acco02g0323 1353 Pfam PAS fold 839 953 IPR013767 GO:0006355
Acco02g0323 1353 Pfam PAS fold 969 1091 IPR013767 GO:0006355
Acco02g0323 1353 ProSiteProfiles PAS repeat profile. 969 1021 IPR000014 -
Acco02g0323 1353 MobiDBLite consensus disorder prediction 1 35 - -
Acco02g0323 1353 ProSiteProfiles PAS repeat profile. 836 906 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0323 Acco-ChrAcco02 2357090 2368491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0323 220 1338 Histidine Kinase Gene Family AT1G09570 80.089 0.0 1889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g0323 02 2357090 2368491 Acco06g0288 06 1815935 1819557 CCT
Acco02g0323 02 2357090 2368491 Acco02g0323 02 2357090 2368491 ECH