Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0312 ATGCCTCTTTACGAGTTATACAGAATGACTAAAGCGAAGCTTGATTCTGAAGAGAAAGACGACACATGTGCAACCGATCAATCTTCCGCACCGGAGAATGACTTTTTTGAGTTGGTTTGGGAAAATGGTCAGATTTCGATGCAGGGTAAGTCAAGCAGAGCAAGAAAGAGCCCAGTACATAAGAGTCTTCCATCTCACAGCTTACCATCTCACAGTCCAAGGACTCAATATAAAGATGTAGGATTTAGTATCGATACAAGGATGGGTAAGTTAGGGCATTTAGACTCTGGATTAAATGAAATTCCGATATCTGTTCCTTCGGATGAAATGAATTTGAGTCAAGATGAAGACATGATACCTTGGTTAAATTATCCAATGGATGAATCTTTACAACATGAATATAGTTTTGATTTCACGCGTGATGTCTCTGGGGTCACTGTAAGTGAGTTCCAAGCTACCTCAAATAATTTTGCTCTGATGGATAAGAGAAGTAGCGGCAATCAGGTATGTAAGGACTCTAACAGAATTCCTTTGCCTGGTGTCTCAAGTTCAGAACAAGCAAATATTACCAAGGGATCTTCACCTGGAGAAGTTGAGCCTAGTGGGCCGAAGGGAAACAACAGCCAGTTATACCCACCATCATTGCAGCAATGTCAACCATCATTTGCATCCATTAGACCCAAAATATCAGATAGCACTGAAAATAATACAAGTAATGCAATACTTCAAGCACCTTGCGGGGAAATCACTCAGACTCCATCTTCCTCTAGTGGTCTTTGTAGCCTAAATATGCAGAAACATGATCCTTTATGTCCTAGGGATAGTTCTAACATGATGAATTTTTCCCATTTTGCAAGACCTGCCGCCATTGTGAGAGCTAATCTTCAGAGCATCAGTATGATGTCTGGTTTATGTTCAGCAAGATCAGAAAGTTTGGGAACTACGAAAAAAGATGTTGATGCAAGTAGCAGCAACCCTCCTGAATCAACACTCGTTGATTTAAATAATCAAAAGAACTGCCAGAAGCTGGTCATGGACCCATCAAAGGCCGAGTTGAAACCAGCCAATCCAAAATCTCTCGGACAGAAGGCTGATTTTGCAAAGCAGGTTGATCCTGCTTGCAAAGAGGACGGTGCATGTAAGAACAATCAAATTTCCGATCAAGTTCCCACGGGAAGTGGCAATAAAGGACAACCAGCTGTTGAAAAAAGCTTTAACCCTGAAGTAGCCTCTTCCTCCGTTTGCTCAGGAAATGGTGTGAAGAGAGGTTCAGATAATGCAAATAAGAATTTGAAGCGAAAAAGTCAAGATACTGAAGACTCTGAGTGTCATAGTGAAGAAGTTGAGGAAGAATCAGTGGGCATTAAAAAGGCAGCTCCTGCTCGAGGTACAAGTTCTAAGAGAAGTCGTGCCGCTGAAGTGCATAATCTATCTGAAAGGAGGCGGAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGAACTCATCCCAAACTGCAATAAGGTGGATAAAGCATCTATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATGCGCCCCCCAATCCAATGATGTTACACCCAGGAATGCAGCACATGCAGACACCACATATGGCTTCATTCTCACCCATAGGAATTGGCATGCAAATGGGGTTTGGAATGGGTTATGGGATGAGCATGTCTGACTTGAATAGTGGATCCCCTAGATTCCCAATGGTTCAGGTGCCCCAAATACAAGGAACTCATTTCCCTGTTTTACCTATGCCTGGACCTGCTGCTGTTTTACATGGGATGCCGAGATCAAGTCCTCAGGTATTTGGGTTTCCTAGTCAGGGACTTTACATGCCAATGCCAAGTGCTTCAGGAGTTTCTATGCCTGGTGGGCCCCTTATGAATCCTTCAAGTTCAGGACAGAACACTTTTGGAGCTGCAGGACTTAGGGAAACTGTTGATTCGGCTTCAGCCTCTAGTTTAAAGGATCCAATGCCAAATGTTAATTCACAGGTTATGCCAAGCACAGGTGGCAGTAACTCCACAGTGCAGATATCCACTCAGTGTGAAGCAACGAATGTTGGAATTGATCAGACAGCACCGGTGCATACTAGCGGGCATACCTCCAATATTAATGACAGTGGAACAACAGATCCTGCCAAAGAAGATAACCTTGTTATTGGTAAATCTTGTAATGACTGA 2238 0.429 MPLYELYRMTKAKLDSEEKDDTCATDQSSAPENDFFELVWENGQISMQGKSSRARKSPVHKSLPSHSLPSHSPRTQYKDVGFSIDTRMGKLGHLDSGLNEIPISVPSDEMNLSQDEDMIPWLNYPMDESLQHEYSFDFTRDVSGVTVSEFQATSNNFALMDKRSSGNQVCKDSNRIPLPGVSSSEQANITKGSSPGEVEPSGPKGNNSQLYPPSLQQCQPSFASIRPKISDSTENNTSNAILQAPCGEITQTPSSSSGLCSLNMQKHDPLCPRDSSNMMNFSHFARPAAIVRANLQSISMMSGLCSARSESLGTTKKDVDASSSNPPESTLVDLNNQKNCQKLVMDPSKAELKPANPKSLGQKADFAKQVDPACKEDGACKNNQISDQVPTGSGNKGQPAVEKSFNPEVASSSVCSGNGVKRGSDNANKNLKRKSQDTEDSECHSEEVEEESVGIKKAAPARGTSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYAPPNPMMLHPGMQHMQTPHMASFSPIGIGMQMGFGMGYGMSMSDLNSGSPRFPMVQVPQIQGTHFPVLPMPGPAAVLHGMPRSSPQVFGFPSQGLYMPMPSASGVSMPGGPLMNPSSSGQNTFGAAGLRETVDSASASSLKDPMPNVNSQVMPSTGGSNSTVQISTQCEATNVGIDQTAPVHTSGHTSNINDSGTTDPAKEDNLVIGKSCND 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0312 745 MobiDBLite consensus disorder prediction 712 745 - -
Acco02g0312 745 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983
Acco02g0312 745 MobiDBLite consensus disorder prediction 381 425 - -
Acco02g0312 745 MobiDBLite consensus disorder prediction 426 441 - -
Acco02g0312 745 MobiDBLite consensus disorder prediction 378 479 - -
Acco02g0312 745 CDD bHLH_AtPIF_like 470 532 IPR047265 -
Acco02g0312 745 Gene3D - 465 528 IPR036638 GO:0046983
Acco02g0312 745 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Acco02g0312 745 PANTHER TRANSCRIPTION FACTOR PIF3 1 696 IPR044273 GO:0003700|GO:0006355
Acco02g0312 745 MobiDBLite consensus disorder prediction 163 213 - -
Acco02g0312 745 SMART finulus 476 525 IPR011598 GO:0046983
Acco02g0312 745 MobiDBLite consensus disorder prediction 712 731 - -
Acco02g0312 745 FunFam Basic helix-loop-helix transcription factor 465 528 - -
Acco02g0312 745 MobiDBLite consensus disorder prediction 46 76 - -
Acco02g0312 745 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 532 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0312 Acco-ChrAcco02 2299602 2303914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0312 1 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.925 4.06e-75 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco02g0312 HLH 8.2e-14 No_clan