Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0310 ATGACCAGAAACAGAGCGAGTCTGGCATATGTCTCCGACGACGCTGCAAGGAAAATAACATATAAGAAAAGGAAGAAGGGTCTGGCCAAAAAGGTGAGTGAACTAATCACTCTTTGTGGGATCCAAGCATGTGCTGTTATTTTCAGCTCCTATGAATCTAAGCCAGATGTTTGGCCGGATTCAAGTGCAGCTCAACAGGTGATCGCAAGGTTTCAGAACACATACGCGTGCGATGAGACAAGGAATTTGAACCAGGAGAGTTTTACTAGGCAAAGGATTGCCAAGGTTAGTGCCCAGCTCAAGAAGCAACGCAAGGAGAATTCCAGGAAGGAGATGAACCTGGCTATGTTCCAGTGTGCTGAAGGGGGAAGTGTGGATGATGAGGCGGTGGCGGATCCTGATCAACTTGATTGCCTGGCCCAGGAGAACATAAACGTCATCAACAAGAAGATGCATGACTTTATTTGA 468 0.4679 MTRNRASLAYVSDDAARKITYKKRKKGLAKKVSELITLCGIQACAVIFSSYESKPDVWPDSSAAQQVIARFQNTYACDETRNLNQESFTRQRIAKVSAQLKKQRKENSRKEMNLAMFQCAEGGSVDDEAVADPDQLDCLAQENINVINKKMHDFI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0310 155 Coils Coil 93 113 - -
Acco02g0310 155 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Acco02g0310 155 PANTHER MADS BOX PROTEIN 10 136 - -
Acco02g0310 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Acco02g0310 155 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Acco02g0310 155 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Acco02g0310 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco02g0310 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco02g0310 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco02g0310 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0310 Acco-ChrAcco02 2259249 2259716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0310 1 151 Type I MADS-box Gene Family AT5G48670 42.484 2.05e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco02g0310 SRF-TF 4.2e-15 No_clan