Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0268 ATGGACCATGTTTACAGTTTAAACACGAAGGAATCATCCCGTTCTCATGATGTCAGAGTTGGTGGCGTTGCTCGTTCTTCAGATCATCACTTGCATCGAGCTCCGGTGGCTAATAATTACGTACAGCTGCTAGTGCCTGATTCCGAAAGAACCGGGTCTGACGGCGTGCCTGAGCCGGACCAGTTCATCAAGACCCAAATCGCCAGTCACCCGCTTTATCCTAATTTATTATCTGCTTACATTGAATGCCAAAAGGTCGGAGCTCCACCAGAACTGGCGTCTCTTCTGGAAGAAATGAACCGGGAAAATCACCCTATCAGGGCTCAGCGTCAGATAGCGGACGATCCTCACCTTGACGACTTCATGGAATCATACTGCGAGGTTCTTCGTAGATTCAAAGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACCTTGTTTTTGAGCAATATCGAGTCTCAGCTCCACAACCTTTGCAAAGGAACATTAACAAATTCAACGGGATGTCGATCCGAGGAGGCAGTTGTGAGTTCAGAAGAAGAACCAGGTTATGGCGAGGGGGAAGATGATTTATATTGTGGCAGCTGCCAAGCTGATAAAGAGATCAAAGAAATGCTTCTTCGTAAGTACAGTGGCTATCTCAGCAATCTGCGGAAGGAGTCCTTGAAGAAAAGGAAAAGTGGGAAGCTTCCTAAAGATGCCAGGATGACACTCCTCAACTGGTGGAACACCCACTACAGATGGCCTTATCCCACGGAGGAAGAGAAAGTGAGGCTATCGGAAACGAGTGGACTGAATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGGAAACGCCACTGGAAGCCATCTAATGATATGCGATTTGCTGTCTTGGAGGGTATAAGTGGGGCCCCCTTCGGACCCACGTTCTGCTTCAAAGCTACTCCTCCACCTCCACCACCTCATTGA 951 0.4795 MDHVYSLNTKESSRSHDVRVGGVARSSDHHLHRAPVANNYVQLLVPDSERTGSDGVPEPDQFIKTQIASHPLYPNLLSAYIECQKVGAPPELASLLEEMNRENHPIRAQRQIADDPHLDDFMESYCEVLRRFKEELSRPFNEATLFLSNIESQLHNLCKGTLTNSTGCRSEEAVVSSEEEPGYGEGEDDLYCGSCQADKEIKEMLLRKYSGYLSNLRKESLKKRKSGKLPKDARMTLLNWWNTHYRWPYPTEEEKVRLSETSGLNQKQINNWFINQRKRHWKPSNDMRFAVLEGISGAPFGPTFCFKATPPPPPPH 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0268 316 Pfam ELK domain 200 219 IPR005539 GO:0003677
Acco02g0268 316 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Acco02g0268 316 SUPERFAMILY Homeodomain-like 222 291 IPR009057 -
Acco02g0268 316 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Acco02g0268 316 CDD homeodomain 223 284 IPR001356 GO:0003677
Acco02g0268 316 Gene3D - 217 290 - -
Acco02g0268 316 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Acco02g0268 316 SMART HOX_1 222 287 IPR001356 GO:0003677
Acco02g0268 316 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Acco02g0268 316 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Acco02g0268 316 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 289 - -
Acco02g0268 316 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Acco02g0268 316 SMART ELK_2 200 221 IPR005539 GO:0003677
Acco02g0268 316 SMART KNOX2_2 108 159 IPR005541 GO:0003677|GO:0005634
Acco02g0268 316 Pfam KNOX2 domain 112 158 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0268 Acco-ChrAcco02 1966953 1970175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0268 63 300 Homeobox Transcription Factor Family AT1G23380 52.049 3.57e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco02g0268 KNOX2 2.3e-23 No_clan