Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0251 ATGACAAGTTCAAGCAATATCAAAACTGCTCGAACAGGAGAGGAGAAGCTAAGCTCACATGGGGTCACATTAACCAAAAGGGGCGCTTCTGAAGATCAACTTGAGGAGTTACTGTCGCCGTATAGTCAAGTGGTTGTATCGATGGCATCAGGGAAAAGGCCACCTCACTTCATGGGTCATGACAGGGACGGTGAAGCTCCTTGTAACAACTCTAAAAGGAGACAAAGCGACTATGTTCCCACACAAATTGTCACCAGTTATGAGGATGACATAAACAAAGGAGATAAAAAGTTGATGGAAAAGATTTTCGAGCCAATGTTTCGCAGAGCGGTTAGAGATGAATTCACAGCTGTACTGAAGCGACACCCTCACCTACAGCCAAGTCCAAGGTTTAGTTCTGTTTGTCCTGTTCCAGAACATCATTATAAATTCCCTGCAGGGTATTATCCATCTAAAATTGTTTTATGCGTTCAAATGTGTAGCGGACAAAGACAGAAAACCTTTCAACTACGTTTTAAGGAATCGCCCGGCGAGTCTTATACAGGCGTTAAAGTTGAGACTAAGAACGGTGCTTCACTTGAAGTTGCTCTGTATCAGTGTGATGAGGAACTTATAGTCACAGAAGGTCCTCTGTCCTCCGCAAGGGTAAAGCTGTACCTTTTACCGGGCAACTTCGGATCCGATGGTCGCAATGATTGGAGCTCCGAGGATTTCGGTCGCAGCACATTAAATCATACAAGGAAAGGCGGCGAATTACTGACTGGGGATCGGTCCCTTACACTGAAAAATGGAGTTGCCACTGTCAATGACATTTTTGTCCATGATATATCGACATGGGCGAAAACCCAACAATTCAGACTAGGAGCCAGAGTTGTGGAAACAATTCCTGAGACAGAGAGCATTAAGGAGGGAGTAAGTCAACCTTTTAGGGTCAAGGATTGTCGTGGACAGGGCTACCGGAAACATGGCACTCCGTCGTTAAATGATGCGATTTGGCGTTTGGAAGACATTGCCAAAGACGGAAAAAGACACAAATGGCTGTTATCCATAGGAATAGACACGGTCGGGGCTTTCTTGCATCAGCTTCGTACCAACCCATGTCACCTGAAACAGGGCCTTAAAAAAGTTGGAGTTGGAGATAATGTATGGAAAAACCTTATCCGCCAAGCTGCTAAAGCCAATACCAAACAAGATGCTAGGCAACCGGATCTTCTCACAGCGCCTCTTAACTCGGAGCCACAGGCATAATTTACCAATCACCGAGTCTTCTGTTTTGGGTTTCAGAATTTGGTGCAAGCAACAGGGCAGGGCCTGCCACAACAAGAACCTCTACTTGCTGTTCCCCAAAGTTTGAATGTCCCATCCCCGTACTTGGGTGAACAACTTGACTTCGACTTTCTGAATGATGTCTTGAACAATTCTTCTGCTCATGAAGGAAATAGTAGCTATGGATGTTCGGGCCCCAATTCTGGTGTGTACATATCAAGCAGAGGCAGTTGCACCACAATATGGGGTCAGATTCGAAGTGCTTTCAAAGCCACATGGACCTGCTCTTCGTTAAGTGGGTTGATGATCACGATGGATCTCCAGCAGAAGGAAACGTTTCATGAGGAATCGATTGATAACAAGAAGTGTTGCACTGACTGCAAAACTACTAAGACCCCACTCTGGAGAGGGGGACCTTCTGGGCCCAAGACTCTGTGCAACGCTTGCGGGATAAGATACAGGAAGAAAAGGGTTTCACCGGTGGGATTGAGATTGAACAGAGGACAAGAGAGGAAGAGAGACAAAAAACAGAATCGGAGTGGCGGTAGAGCTGTTGGTAATGACGGAGACTATTTGGAGGAGCGTTTGAAGATGAATTTGGTGGCATTAGGTGAGGAGGTTTTGCTGCAACGGTCACATTCGGCGGCAAAGAAGCAGAGGTGGCGTAGGAGGAGGAGGGAATTAGAGGAGGTGGAACAAGCCGCCTTCTGCCTGATGGCCTTGTCTTGTGGACTTGTTTTCGCTTGA 2013 0.4645 MTSSSNIKTARTGEEKLSSHGVTLTKRGASEDQLEELLSPYSQVVVSMASGKRPPHFMGHDRDGEAPCNNSKRRQSDYVPTQIVTSYEDDINKGDKKLMEKIFEPMFRRAVRDEFTAVLKRHPHLQPSPRFSSVCPVPEHHYKFPAGYYPSKIVLCVQMCSGQRQKTFQLRFKESPGESYTGVKVETKNGASLEVALYQCDEELIVTEGPLSSARVKLYLLPGNFGSDGRNDWSSEDFGRSTLNHTRKGGELLTGDRSLTLKNGVATVNDIFVHDISTWAKTQQFRLGARVVETIPETESIKEGVSQPFRVKDCRGQGYRKHGTPSLNDAIWRLEDIAKDGKRHKWLLSIGIDTVGAFLHQLRTNPCHLKQGLKKVGVGDNVWKNLIRQAAKANTKQDARQPDLLTAPLNSEPQAXFTNHRVFCFGFQNLVQATGQGLPQQEPLLAVPQSLNVPSPYLGEQLDFDFLNDVLNNSSAHEGNSSYGCSGPNSGVYISSRGSCTTIWGQIRSAFKATWTCSSLSGLMITMDLQQKETFHEESIDNKKCCTDCKTTKTPLWRGGPSGPKTLCNACGIRYRKKRVSPVGLRLNRGQERKRDKKQNRSGGRAVGNDGDYLEERLKMNLVALGEEVLLQRSHSAAKKQRWRRRRRELEEVEQAAFCLMALSCGLVFA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0251 670 Pfam GATA zinc finger 546 580 IPR000679 GO:0006355|GO:0043565
Acco02g0251 670 ProSitePatterns GATA-type zinc finger domain. 546 571 IPR000679 GO:0006355|GO:0043565
Acco02g0251 670 MobiDBLite consensus disorder prediction 55 70 - -
Acco02g0251 670 Gene3D - 541 603 IPR013088 GO:0006355|GO:0008270
Acco02g0251 670 Pfam Calmodulin binding protein-like N-terminal domain 168 313 IPR046831 -
Acco02g0251 670 ProSiteProfiles GATA-type zinc finger domain profile. 546 576 IPR000679 GO:0006355|GO:0043565
Acco02g0251 670 Pfam Calmodulin binding protein central domain 326 391 IPR046830 -
Acco02g0251 670 CDD ZnF_GATA 546 597 IPR000679 GO:0006355|GO:0043565
Acco02g0251 670 MobiDBLite consensus disorder prediction 591 610 - -
Acco02g0251 670 PANTHER OS02G0177800 PROTEIN 84 396 IPR012416 GO:0005516
Acco02g0251 670 SMART GATA_3 540 598 IPR000679 GO:0006355|GO:0043565
Acco02g0251 670 MobiDBLite consensus disorder prediction 1 26 - -
Acco02g0251 670 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 541 580 - -
Acco02g0251 670 MobiDBLite consensus disorder prediction 1 28 - -
Acco02g0251 670 MobiDBLite consensus disorder prediction 52 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0251 Acco-ChrAcco02 1856443 1862480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0251 103 390 Calmodulin-binding Proteins AT4G25800 33.564 9.05e-39 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco02g0251 Calmodulin_bind 8.1e-62 No_clan