Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0249 ATGCGGACGCCATTTGAACGTTCTCACACCTATAGCTCAATCTTTTTCCCTTCCAAAGATTCCCACCTCAACTCTATATTGTCTCAGATGGTAAGGGGGGGAAAGGCTGGTGGCAAACGCAGTTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGTTCTGATGATTCGGATGAGGACTATGTGGTTCCAGATGAAGATAGAGAATTGTCTGATTGTTCGGAGGATTCATTGTTTTCTTTAGATGGAAGTGAATCCGAGGAGAGTTTTGGTAACTTTGTAGAGGATGAGGAGGAGGAAGAAATTGAAGTGAGGAAATTCAATAGATCCAAGACAAAAAATGACATTTGTGGTCGGCAGAAAATTGGCAGGAAACCCTCACAACAGAGAGGAAGGATAACTTACTCACATCAACCAGAAGAAGAAGAATACAAAGAAGAAGAAGAAGAACAAGAAAAAGAAGAGGAAGGTGATGGAGAGACAGATGAATATGAGGAAGATGATGCTGATGAAGATTTTGATTGTGATGAGGATGAGGAATTTACACCTGAGGAAGAAGATTACTCAGATGAGGAAGAAATGAAGGGGAGAAAGAAGAAAAGTAATGGCATAAAAATGGGCAAGAAGGCTGTTCAGAAGCTGGCCTCTGTAACTTATACTAGAGGTCGTAAAAGAAGGAATTCTAGAACTGCAAGGAAGCCCTTGAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAGGAGGAAAACAAAGTATGATGATGAGGGTGATTTTATAGATCATGGTCCTGCCATCAGAACCAAGAGTAAGAAAAATCCAGGACGAAAAAGGAGAAGACAAATCATTGATTCAGATTCACACTCAGATTGTGTGTTATCTAGGTCATCTGATTATGAGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGAATATTAAGAACTAATTTGAGGAGTTCATCCCTTCTGACAAAAAATGAAGAGGATGGAACCCATGAAGAACTACATCAGCAAAGAAAGCCTCCAGCCCGTAAAGGTAAGGAAAAGATAGAGGAACATCAGGGGAGAAAGGGCAAGGACAAGGTAGAGGATTTAAAAAGTGAGCCAGTAAAGCAGGTGTGTGGTATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGCACACACTTTTTCTGTTCTGCTTGCATTATGGAGTGGGCAAAAGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAAAACAATCAGTAAGCCTGCACGATCAACTACAGCAGGAGTTGATTTGAGAGGATCAGTTATACAAGTCCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTATGTATTTTGTTCAGAGTGCCATCAAGGTGGAGACGATGATCTCATGTTATTGTGTGATCTCTGTGACTCTCCTGCACACACATATTGTGTTGGTCTGGGTCGTGAAGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGTTCTCAAGCTAGGGAAGGTGTGGCTGACTCAAGGGCAGCAACAGGTCAGAGCCTACCTGGTAGACCATCGCCTGCTGTACATGAAAGAGAAACTATTGACCTCAACTTGATGTCTTCACCACGTGCAGCTTTTAGTCAAGGATTAGGGAATTTTTCTTCTAGATTTTCTGGTAGAAGTGTTGAAGGAGTTTCTCCAGTGTCTGGAGGAGGGGCACCAACTTTATCTGAGAGACGTTGGATACACCGTCAAATTCAACAGTTGCTTTCATTGGATAGAATGACTTCTGCTGCTGGTCGATCTAATGGCATTTCAGCTACTAATTCAACTAGTAACCTATATGGCTGTCAAAATTATCAAAGCAGGTTAACAACCACTCAAGACACAAGGACACAGAACGTGGGAACATCGTCATATCACTCATTTTTTGAGGAAAGATTACGCAACAACACCTCTCCACTGATGCAGAGTGGGGATCATTTCTCTATGAGAATAAGCAATTCAAGAAGGCCAGTAATTCAAGATTCAGCTCCATTCACCAACAGAGCTGTGAACGGGGCATTTTGGCCTGGTCTTGTGGGGACACCTCCTGTATCAGATTATGTACAAGTGCATCAGCTTAGCAGCAGTTCACACATTGTTGCTGATGGAAGTGTGTCCCCTGCTATTAGAGAAGATGGTAACTTTCACATAGTAAAGGAACAATTGTCATCAATGGTTAAACGCCACCTTATGGGCTTGTCACAAAATATTGATTTGGGCAACAGTACCATCAAGGACATTGCAAGGATTTCTTTGAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAATGAGGTTTGCGCGGTGCCCCCTCCTTCAGCCTGTCCTCACATTGAACTAATGGCTGGTGGGCAAACGAGTCTTATTAAAGGTTGCTGCTCATCCTGCTTCGATTCTTTTGTAGGAGATGTGATTAAGAGGATCATGGACACAAGAATGTCGCAGTGGTTGCGACTTGGCCTTTAG 2586 0.4269 MRTPFERSHTYSSIFFPSKDSHLNSILSQMVRGGKAGGKRSFRKRVRSKEGGSDDSDEDYVVPDEDRELSDCSEDSLFSLDGSESEESFGNFVEDEEEEEIEVRKFNRSKTKNDICGRQKIGRKPSQQRGRITYSHQPEEEEYKEEEEEQEKEEEGDGETDEYEEDDADEDFDCDEDEEFTPEEEDYSDEEEMKGRKKKSNGIKMGKKAVQKLASVTYTRGRKRRNSRTARKPLRKKRRKNGGLRRKTKYDDEGDFIDHGPAIRTKSKKNPGRKRRRQIIDSDSHSDCVLSRSSDYEYTISEEEREQVREAEELCGILRTNLRSSSLLTKNEEDGTHEELHQQRKPPARKGKEKIEEHQGRKGKDKVEDLKSEPVKQVCGICLSEEDKRRVRGVLDCCTHFFCSACIMEWAKVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVFCSECHQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQAREGVADSRAATGQSLPGRPSPAVHERETIDLNLMSSPRAAFSQGLGNFSSRFSGRSVEGVSPVSGGGAPTLSERRWIHRQIQQLLSLDRMTSAAGRSNGISATNSTSNLYGCQNYQSRLTTTQDTRTQNVGTSSYHSFFEERLRNNTSPLMQSGDHFSMRISNSRRPVIQDSAPFTNRAVNGAFWPGLVGTPPVSDYVQVHQLSSSSHIVADGSVSPAIREDGNFHIVKEQLSSMVKRHLMGLSQNIDLGNSTIKDIARISLNTILAACGLEHKKNEVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVGDVIKRIMDTRMSQWLRLGL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0249 861 MobiDBLite consensus disorder prediction 218 244 - -
Acco02g0249 861 MobiDBLite consensus disorder prediction 57 71 - -
Acco02g0249 861 Pfam Ring finger domain 378 421 IPR001841 -
Acco02g0249 861 ProSiteProfiles Zinc finger RING-type profile. 379 421 IPR001841 -
Acco02g0249 861 SMART ring_2 379 420 IPR001841 -
Acco02g0249 861 ProSitePatterns Zinc finger RING-type signature. 398 407 IPR017907 -
Acco02g0249 861 MobiDBLite consensus disorder prediction 31 294 - -
Acco02g0249 861 ProSiteProfiles Zinc finger PHD-type profile. 470 519 IPR019787 -
Acco02g0249 861 PANTHER F18C1.6 PROTEIN 30 852 - -
Acco02g0249 861 MobiDBLite consensus disorder prediction 101 119 - -
Acco02g0249 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 439 IPR013083 -
Acco02g0249 861 Pfam PHD-finger 472 518 IPR019787 -
Acco02g0249 861 MobiDBLite consensus disorder prediction 141 189 - -
Acco02g0249 861 SMART PHD_3 472 517 IPR001965 -
Acco02g0249 861 MobiDBLite consensus disorder prediction 330 367 - -
Acco02g0249 861 CDD RING-HC_Topors 377 424 - -
Acco02g0249 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 520 IPR013083 -
Acco02g0249 861 MobiDBLite consensus disorder prediction 527 551 - -
Acco02g0249 861 SUPERFAMILY RING/U-box 378 427 - -
Acco02g0249 861 SUPERFAMILY FYVE/PHD zinc finger 442 518 IPR011011 -
Acco02g0249 861 MobiDBLite consensus disorder prediction 326 367 - -
Acco02g0249 861 MobiDBLite consensus disorder prediction 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0249 Acco-ChrAcco02 1847352 1851081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0249 467 516 C2H2 Transcription Factor Family AT3G01460 48.077 1.02e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco02g0249 PHD 4.8e-09 CL0390