Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0219 ATGAGTAGCCGGTCCAGTCGCACCATCTATGTTGGCAATCTTCCTGGTGATATTCGCTTGAGAGAAGTAGAGGATCTTTTTTACAAGTATGGTCCCATTGTTGACATTGATTTAAAAATCCCTCCAAGACCACCTGGTTATGCTTTTGTCGAGTTTGAAGATCCTCGTGATGCAGAAGATGCAATTCATTATCGGGATGGATACAATTTTGATGGTTTCCGTTTGCGGGTCGAACTTGCACATGGTGGCCGGGGATCCTCATCAGACCGTTACAGTAGCTACAGTTCTAGAGGCGGTAGTAATGGAGTTTCCAGGCGCTCTGACTATCGCGTTATGGTCACCGGATTACCTCCTTCGGCTTCTTGGCAAGACTTGAAGGATCACATGCGTAGAGCTGGTGATGTGTGTTTCTCTCAAGTCTTCCGTGAACGTGGTGGAATGACTGGGATAGTGGATTATACAAACTATGAAGATATGAAATATGCTATTAGGAAGCTTGATGACTCAGAATTCCGCAATGCCTTCTCTCGTGCATATATACGGGTGAGGGAATATGATCGGCGGAGTTATTCTCGAAGTCCTAGCCGTGATTCAAGGAGAAGCTATTCTAGAAGTCGTAGCCGCAGTCCTTACACGAGTCGAAGTCCTAGCTACAGCGAGAGGAGCCAAAGCTTGTCTCCAAAGGTAAAACGTTCACGGCGATCATTATCAAGATCTCGGTCAAGATCCAGATCACCAAATTCATCTTCTCCACGTCACAAGAGTCGCAGTCTAAGCCGAACTCCTAGAGGCTCATCAAAATCACGTTCACCTTCAGTGAGATCTGAGGGTAGCAGATCTGTGGAATCTGGAGATCGTTGA 861 0.4634 MSSRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIHYRDGYNFDGFRLRVELAHGGRGSSSDRYSSYSSRGGSNGVSRRSDYRVMVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGMTGIVDYTNYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSRSRSPYTSRSPSYSERSQSLSPKVKRSRRSLSRSRSRSRSPNSSSPRHKSRSLSRTPRGSSKSRSPSVRSEGSRSVESGDR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0219 286 MobiDBLite consensus disorder prediction 186 286 - -
Acco02g0219 286 Gene3D - 1 108 IPR012677 -
Acco02g0219 286 MobiDBLite consensus disorder prediction 86 103 - -
Acco02g0219 286 CDD RRM2_SF2_plant_like 109 184 - -
Acco02g0219 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Acco02g0219 286 SMART rrm1_1 8 78 IPR000504 GO:0003723
Acco02g0219 286 SMART rrm1_1 110 179 IPR000504 GO:0003723
Acco02g0219 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Acco02g0219 286 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 108 - -
Acco02g0219 286 MobiDBLite consensus disorder prediction 82 105 - -
Acco02g0219 286 CDD RRM1_SF2_plant_like 8 79 - -
Acco02g0219 286 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 4 264 - -
Acco02g0219 286 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Acco02g0219 286 MobiDBLite consensus disorder prediction 241 278 - -
Acco02g0219 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Acco02g0219 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 173 IPR000504 GO:0003723
Acco02g0219 286 Gene3D - 109 186 IPR012677 -
Acco02g0219 286 MobiDBLite consensus disorder prediction 186 204 - -
Acco02g0219 286 MobiDBLite consensus disorder prediction 205 225 - -
Acco02g0219 286 FunFam serine/arginine-rich splicing factor SR34A-like 109 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0219 Acco-ChrAcco02 1611076 1615708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0219 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 6.85e-06 45.1