Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0199 ATGTCGAACAACACAAGCGGTGACAGTGTAAGCTTCTCGACAGAGAACGCCGGAGAAGGTGGTGCCAAACGGCCGTCGGAGGTACTTGGTCAGTTTCACAGTCCAAATTCTCTCTCTTCAACGACGACAACCAACAGCAATGGTTCCAACACACCTCCACCTCCACCTCCTAAGAAAAAGAGAAACCTACCAGGAAATCCAGATCCAAGTGCTGAGGTGATAGCTCTATCACCAAACACCCTCATGGCCACAAACCGATTCATCTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTGCAATTGCACCGTCGAGGCCATAATCTGCCATGGAAGCTCAAGCAAAGAAGCACCACAGAAGTTCGAAAGAAGGTGTACGTTTGTCCTGAACCATCGTGCGTCCACCACAACCCAGCCCGAGCACTTGGTGATCTCACTGGCATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAGAAATACGCCGTTCAATCTGACTGGAAAGCCCACTCTAAGATCTGTGGAACCAGGGAATACAAATGTGACTGTGGCACCGTCTTTTCCAGGAGAGATAGCTTCATCACGCATAGAGCTTTCTGTGACGCACTGACTGAGGAGAACAACAAAGCCAATGAAAGACAAACAATGCAAGGAATAAGCCCGGGCTTTAGGCCGGGACATCAAATTCAGAACCTGGTTTCTTCATTACCAGTCAATAATACCAATAATATCGTCCCGAACCCACAAGTTGGGAATATGGATAAGAACGATAACAAGCATCCAATGTCGTCGCTGCTTCAGGAGCTCATGCCCATGCCTGCAAACAAACCCTTTAACCATAATATGAATAATGCAGGAAATCTATTCACGAGAAGCCTCTCTTCTAATTCCTCAGCACCTCCTCTTCAACTAAATTCGAATTCACCCAACGTTTTCGAAGAGAATGGGCATCAACTACCGCTACCGGCGGCGGCCGCAGCTTCCTCACAGCTCATGTCTGCGACGGCGCTGCTGCAGAAAGCCGCACAAATGGGTGCAACTGTGAGCAGCTCGTCGTCCATGGCGCCGCCGTCATATGGTACAAACGGGCTTTCCTTCATGAACCACTACATGCAGAACGGGCAAGAGGATCATATCTCCGGTGGTGGAGGCCAGTATTTAAATGCGAACGGGAGCATGGGAATGAACGGTGTGGATATGTTTAACGCTATCTTGGACCAAAGCAAGGCTTTCTCGAAGATGATAGAGGAGAATAATCAAGGTAATAATAATCGAGTTTTGCATGGTGGGGCAAGTGGTGGGGCTATTAACATTGGTGCAACTAAGGGAAGTGGGGATGTGCTGACTCTGGACTTTATGGGAATTGGAGGGGGAGGAGGTTCACATGCAAGTTTCTACGGAAACCAACACCAACAGGGAGAAAAAGGTGCCATTAGAGGAGATGACATCTGGAGAAATTGGTCTATCAAGAATGCAGGATTTGAATCATTCTCAGCAGCAGGCAGCATCAACTGA 1548 0.4819 MSNNTSGDSVSFSTENAGEGGAKRPSEVLGQFHSPNSLSSTTTTNSNGSNTPPPPPPKKKRNLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSTTEVRKKVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTVFSRRDSFITHRAFCDALTEENNKANERQTMQGISPGFRPGHQIQNLVSSLPVNNTNNIVPNPQVGNMDKNDNKHPMSSLLQELMPMPANKPFNHNMNNAGNLFTRSLSSNSSAPPLQLNSNSPNVFEENGHQLPLPAAAAASSQLMSATALLQKAAQMGATVSSSSSMAPPSYGTNGLSFMNHYMQNGQEDHISGGGGQYLNANGSMGMNGVDMFNAILDQSKAFSKMIEENNQGNNNRVLHGGASGGAINIGATKGSGDVLTLDFMGIGGGGGSHASFYGNQHQQGEKGAIRGDDIWRNWSIKNAGFESFSAAGSIN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0199 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Acco02g0199 515 MobiDBLite consensus disorder prediction 49 63 - -
Acco02g0199 515 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Acco02g0199 515 MobiDBLite consensus disorder prediction 1 71 - -
Acco02g0199 515 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Acco02g0199 515 MobiDBLite consensus disorder prediction 30 48 - -
Acco02g0199 515 FunFam protein indeterminate-domain 12-like 66 134 - -
Acco02g0199 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 478 IPR031140 -
Acco02g0199 515 Pfam Zinc-finger double-stranded RNA-binding 87 109 IPR022755 -
Acco02g0199 515 Gene3D Classic Zinc Finger 141 222 - -
Acco02g0199 515 MobiDBLite consensus disorder prediction 1 16 - -
Acco02g0199 515 Gene3D Classic Zinc Finger 66 134 - -
Acco02g0199 515 SMART c2h2final6 128 158 IPR013087 -
Acco02g0199 515 SMART c2h2final6 87 109 IPR013087 -
Acco02g0199 515 SMART c2h2final6 163 183 IPR013087 -
Acco02g0199 515 FunFam protein indeterminate-domain 5, chloroplastic-like 141 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0199 Acco-ChrAcco02 1488473 1491008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0199 40 365 IDZ Gene Family AT3G50700 53.372 1.40e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g0199 zf-C2H2_jaz 7.6e-05 CL0361