Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0112 ATGGAGCAGTACGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAGGCATAAGCACGAGAAGAAGAAATATGTTCTGAAGAAGATCCGCCTGGCCCGCCAAACTGAGAGATCTCGTAGATCTGCTCACCAGGAGATGGAGCTAATCTCTAAATTCAGAAATCCATTCATTGTGGAGTATAAAGATTCATGGGTAGAGAAGGGTTGCTATGTGTGCATTATTATAGGTTACTGTGAGGGTGGGGATATGGCAGAAGCCATAAAAAAAGCAAATGGAATTCTTTTTCCAGAGGAGAAACTTTGCAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACTTACACATGAACCATATTCTTCATCGGGATGTCAAGTGTTCAAATATTTTTTTGGCAAAAGATCAAGACATACGCCTTGGTGATTTTGGTCTTGCCAAAATGTTGACTTCAGATGATCTTGCTTCTTCTGTTGTGGGAACACCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCTTTGGGATGTTGTGTATATGAAATGACAGCACATAAACCTGCTTTTAAGGCATTTGATATACAAGCGCTGATAAACAAGATTAACAAGTCCATAGTGGCGCCACTACCAACAAAGTATTCTGGTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCGGAGCTACTTGGGCACCCTCATCTTCAGCCTTATGTTCTCAAGATCCATCTTAAAATCAATAACCCCAGACGAAGTACACTCCCAGCCAATTGGCCAGACTCCAAATACGTGAAGAAAACTAGATTTGCGGAGCCAGGCGATTATCCTACTTCCACTTACAGGGCTAAACGGAATTCTTTCAAAAATGACCGAACTTTGAATCCTAGCATATCTGGAGCTGAGCAAGATTCTGTATGCTCTACCCTAGAAATAGATTGTGCTACAGATCATTTGAATCACCGGTTAGCTGAACTGTGCATTGGGGATAGCCCTGAAGTGAACAAAATCTGTAAGCCAGGAGTTTCCAGGAGTTCAAGCATTTCCAGAACTCCAAGAGTGACATCATCAAAAGCTTCTGCCAGCCCCAAGAAACAAATGGAGTTTTCAAAGAATCGTGAGCTGCATCCTATTTCACAGAATACCAGAAAATCTCTCAATACAGCTCGTAGAGCATCATTTCCGTTGCCAAAACGGGGTGCTGTTGTTGGCCATGAAAAATCACCTCATATTTCAGTCAACTCTCCCCGAATTGACAGGATAGCTGAATTCCCATTAGCATCATTTGAGGGTCCACTGTTTCCCGTCAATAGAACGTCATCAACCTCTGCACAGGGTTCCTCAGTCTCTCCGCCTTGTGATGATCGTTCAATTATGAAAGATAAATGCACTGTTCAGGTATCTGATAGAGCTACTGTCAGGGCTACTTTGACGGATGCTTTGCAGAGAACCAAATGCAACGTGTATCAGGAAAATGATGAGGTGAAAAGTGGGTCCTCTGATCAAAATGCAACTGCCGGCGCATCAAGCCATACCTCTTCAGACTGGCACCGCCGGCATTTTGACACTTCATCATACCAACAAAGAGCTGAAGCCTTAGAAGGGTTGCTCGAATTTAGCTCAAGGTTGCTACAACAGGAAAGGTATGAAGAACTTGGGGTCTTGTTGAAACCCTTCGGACCTGGAAAGGTCTCCCCACGTGAAACTGCTATCTGGTTGAGTAAAAGCTTCAAAGAAAACACTCAACCATGA 1818 0.4329 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGILFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLAKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINNPRRSTLPANWPDSKYVKKTRFAEPGDYPTSTYRAKRNSFKNDRTLNPSISGAEQDSVCSTLEIDCATDHLNHRLAELCIGDSPEVNKICKPGVSRSSSISRTPRVTSSKASASPKKQMEFSKNRELHPISQNTRKSLNTARRASFPLPKRGAVVGHEKSPHISVNSPRIDRIAEFPLASFEGPLFPVNRTSSTSAQGSSVSPPCDDRSIMKDKCTVQVSDRATVRATLTDALQRTKCNVYQENDEVKSGSSDQNATAGASSHTSSDWHRRHFDTSSYQQRAEALEGLLEFSSRLLQQERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTQP 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0112 605 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Acco02g0112 605 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g0112 605 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Acco02g0112 605 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g0112 605 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 560 - -
Acco02g0112 605 MobiDBLite consensus disorder prediction 364 388 - -
Acco02g0112 605 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Acco02g0112 605 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Acco02g0112 605 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Acco02g0112 605 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g0112 605 MobiDBLite consensus disorder prediction 364 391 - -
Acco02g0112 605 MobiDBLite consensus disorder prediction 514 534 - -
Acco02g0112 605 SUPERFAMILY Protein kinase-like (PK-like) 1 304 IPR011009 -
Acco02g0112 605 MobiDBLite consensus disorder prediction 514 541 - -
Acco02g0112 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Acco02g0112 605 CDD STKc_Nek 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0112 Acco-ChrAcco02 897219 901278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0112 10 296 MAP Kinase Kinase Kinase AT1G53570 30.100 1.21e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Acco02g0112 Pkinase 1.9e-63 CL0016