Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0095 ATGACAGGGTTGAAAGTGGCGGAGCCAGATAAGTACGGCATGATAAACTTTGAAGAGACCGAGTTACGACTCGGATTGCCCGGTGCTTCATCTGACGCCGAGTCTAAGCTCAAGGCCACCTGGGCTACCGGTGCCAAGAGAGGCTTCTCCGGCACCTCTGTGGATTTGAAGCTCAATCTTTCTTCCAACAGCAATATTGCTCACAAGCCAACCGACAACACAGCTGCTGCTTCTCCCTCTAACGATCCCGCCAAGCCACCCGCTAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGATCATCGAGGAAGAACGTTGGGACATCGCAGAACCAAAAGAAGAAAGAAGAAGGAGCAGCGTTCGTGAAGGTGAGCATGGATGGCGCGCCTTATCTGCGCAAAGTGGACTTGAAACTGTACAAGAGCTACCAACAACTGTCAGAGGCACTTGCCAAAATGTTCAGCTCCTTCACTAACGCCCCTCCTCATGCCACCAAGGACTTCCTCAACGAGAGCAAATTGATCGATCTTTTAAGCGGCTCCGACTACGTTCCCACTTATGAAGATAAGGACGGCGATTGGATGCTCGTCGGCGACGTCCCCTGGGACATGTTCGTGCAATCTTGCAAACGCCTCCGCATCATGAAAGGATCCGACGCAATTGGGCTAGCGTCAAGGGCGGTGGAAAGATGCAAGAATAGAAACTGA 705 0.5234 MTGLKVAEPDKYGMINFEETELRLGLPGASSDAESKLKATWATGAKRGFSGTSVDLKLNLSSNSNIAHKPTDNTAAASPSNDPAKPPAKAQVVGWPPVRSSRKNVGTSQNQKKKEEGAAFVKVSMDGAPYLRKVDLKLYKSYQQLSEALAKMFSSFTNAPPHATKDFLNESKLIDLLSGSDYVPTYEDKDGDWMLVGDVPWDMFVQSCKRLRIMKGSDAIGLASRAVERCKNRN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0095 234 Gene3D - 112 228 - -
Acco02g0095 234 SUPERFAMILY CAD & PB1 domains 112 215 - -
Acco02g0095 234 MobiDBLite consensus disorder prediction 63 115 - -
Acco02g0095 234 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 221 IPR003311 GO:0005634|GO:0006355
Acco02g0095 234 FunFam Auxin-responsive protein 113 226 - -
Acco02g0095 234 Pfam AUX/IAA family 19 225 IPR033389 -
Acco02g0095 234 ProSiteProfiles PB1 domain profile. 118 216 IPR000270 GO:0005515
Acco02g0095 234 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0095 Acco-ChrAcco02 814109 816220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0095 110 225 B3 DNA Binding Superfamily AT3G61830 28.448 3.16e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco02g0095 AUX_IAA 3e-76 CL0072