Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0090 ATGGCGGGCCAGGTGGTCAAAGTGAAGAGGGAGACGCTAGAAGCATGCATGACATGCCCTCTTTGTCATAAACTGTTGAAGGACGCTACTACCATCTCTCTCTGCCTTCATACGTTCTGCAGGAAATGCATATACGAGAGATTCTCAGATGAGGAGGCAGATTGCTGTCCAGTATGCAATATTGATCTGGGCTGTCTTCCGGTGGAAAAACTGAGGCCAGATCACAATTTGCAAGATATTAGGGCCAAAATTTTCCCATTGAGACGAAGAAAGATTAAGGCCCCAGAGGCAATACCTTCAACACCTCTGCCAGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGATTTCTGCTCCTAAAGTTTCAATGCAGACTGGCTTCACAGGAAAGAGAACAAAAACTGGTACAAGAAAGGCTGCTGCTTTGCGCGGATGCAGTTTTTCTGTTCATGAATCCATAAAGAAGGAAGAAGTCTATACGGAGGATAACCCAGATTCTTCCACAGCTGAGCCTTCTAAGAGGAGTAGGCCTAATGAAGAAACAGAGAACAATGGGGAGCTTCCAGAAGGGAAAGTTGATCTCTGGACACCCTTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCAAAGTCAACTTCGCAAGCTTTGTCTCTTGCCAAATCTGAGCCTCCAACTACTCCCAATGGTGGAATAAATATGCCTGAAATAACAACCAAATCAGAGTCACCTGCTACTGTCCATACTGAATTACGTATGCTTAAAACCAAAAACAAGGATAATGGATATAAAACAAAATTTGGAGATGACAAGGATGAAAATAATGTGCGTCCGGGACAAGTGAGACGGAGAAGAGTCCGTCCAGCTGGTCAGAAAAGAGATGCAGCATCTGAGATTTCTGCCTCAGCCCAAGTTATGCTAGATGCAGCTGGGGGAAGGGGTAACAGAGAAAACTGTCCTATTTGGTTTTCATTGGTTGCTTCAGAAGACCAGAAAGGAGATCTTCCCTTGCCACAGATTTCAGCATCCTACTTAAGAATAAAGGATAGTACGGTGCCCGTCTCCTCTATTCAAAAGTACCTTGTTAAGAAACTTAATCTTGCCAGCGAAGCAGAGGTGGAAATAATGTGCCGTGGTCGACCAGTTATACCATCTTTGCAACTGCATAACTTAGTTGATCTTTGGTTCAAGGCTCCATCATACTCTAAAAAGTTTCCTGCTTCTGTTGGCTCCTCCGCCAAGGACTTCGTTATGGTCTTATCATATTCTCGAAAGGCCCTCCCTCCTTAG 1296 0.4437 MAGQVVKVKRETLEACMTCPLCHKLLKDATTISLCLHTFCRKCIYERFSDEEADCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPLRRRKIKAPEAIPSTPLPAKRKERSLSSLVISAPKVSMQTGFTGKRTKTGTRKAAALRGCSFSVHESIKKEEVYTEDNPDSSTAEPSKRSRPNEETENNGELPEGKVDLWTPLNCLVEAANRTKSSKSTSQALSLAKSEPPTTPNGGINMPEITTKSESPATVHTELRMLKTKNKDNGYKTKFGDDKDENNVRPGQVRRRRVRPAGQKRDAASEISASAQVMLDAAGGRGNRENCPIWFSLVASEDQKGDLPLPQISASYLRIKDSTVPVSSIQKYLVKKLNLASEAEVEIMCRGRPVIPSLQLHNLVDLWFKAPSYSKKFPASVGSSAKDFVMVLSYSRKALPP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0090 431 SMART ring_2 19 59 IPR001841 -
Acco02g0090 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Acco02g0090 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Acco02g0090 431 MobiDBLite consensus disorder prediction 157 193 - -
Acco02g0090 431 SUPERFAMILY RING/U-box 12 84 - -
Acco02g0090 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 429 IPR044807 GO:0004842
Acco02g0090 431 MobiDBLite consensus disorder prediction 157 188 - -
Acco02g0090 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Acco02g0090 431 MobiDBLite consensus disorder prediction 259 282 - -
Acco02g0090 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Acco02g0090 431 Gene3D - 306 400 - -
Acco02g0090 431 MobiDBLite consensus disorder prediction 207 247 - -
Acco02g0090 431 CDD RING-HC_PCGF 17 60 - -
Acco02g0090 431 MobiDBLite consensus disorder prediction 259 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0090 Acco-ChrAcco02 797590 801978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0090 1 350 C3H Transcription Factor Family AT2G30580 44.444 4.19e-87 267