Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g0068 ATGATTGCTGTCCGGGGAAGAGGAGGGAAAATCACGACACGAGCCAATCAAGCAGAACAATCGTTTGGCTCCCAACCAAGTTTATTCACAGCGGTTAAGATGGAGGGAAAGACCGATGAACTGGAAGATATAGGAAGTGCTTCAAGTGGTTCATTTATTGATGATTCAGACGATGGGTCTTCAACTTCTGAATTAGATGATAAAGCACATCCCGAGGAACCTTTGACTGAGGAAGAAATAGAAGGTCTGATTGCTGAGTTGTTAGAAGTTGAGGGCAAGGCTGCAGAGGCTCAAGAAGCTCTTGAGGAGGAGTCTCTTAACAAAGTAGAGATTGAGGTTAGGCAAGAGTTGGAGCAAACTCTTCAGGGCAATGATTTGGAATCTGCTGTTGCAGATGAGATGACTACTTTAAAGGAAGAGTGGGAAGTTGTTCTGGATGACCTTGAGACTGAAAGTGCCTACTTGCTGGAACAACTTGACATGGCTGGTGTTGATCTGCCAAGGCTTTATAAGTGGATAGAAAGGGAGGCTCCTAATGGTTGTTTGACTGAAGCTTGGAAAAAGAGGAACCACTGGGTTGGTACTCAGGCATCAGAAGATTCTGCGGTGTCAGTTGCTGATACTGAGAAGTATCTACAAGTCTGCAGACCTGTTAGAAGACGACATGGTAAACTGTTGGAAGAGGGTGCCAGTGGATTTCTTCAAAAAAGACTTGATGAATCCAGTGAACCAGTAAAGGAAAAAACTGAGGCAGATTGGGATATGTTTAACAAAATATTTCACGATGGTAGTGATGCTGATGCTTCATTTGGCAGCAAGAATTGGGCTTCTGTTTATTTGGCCAGCACACCGCAGCAAGCTGCACAGATGGGACTTGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGACGACATTGATGGCACTTCTGCTGATCCATTTATTGCAGCTGCAATTGCAAATGAAAAAGAGATTGAACTCTCTGATGTACAGAAAAGGAAATTTAAAAAGGTCAAAGAAGAAGATGATGTAATTGTTGGTCGGAAGCTTCAAATCCATTTAAAACGAAGGAGGTATCGAAAGAATAAAAAGCAGAGGGAAACTATAGAGAGTCTTAAACAGAAGTCTTCATCTGTTGATTGTTCTAATCCTGATATGGAGGAAGAAACTTGTGATGATGGCGAAAAGGTGACTAACAATGAAGTTGGATGTTTGAATATGAAGAATGATAACATTGAAGATCTGGGTGGCAACGATGACCCTGACCAAGTGGAGCCTATGAATATTGGCCCTTTGCCAGAGCTCTCTAAATCTTCATTGTCTGATGTTGAACAGAGAGGTACCAAGCGACTAAATGATGGTGAAGAGTGTAATGATACAAAAAAGAGTCGGATTGTCATTAACAGTGGTGATGAAGCTGTTGCGGTTGAAAATAATATAGTTAGGAATACAAATACATTAGATGATCAGTTTGAGATGCAAGGCACCTGTACCGGCATTGCTGATAGTCTTCCTTCACAGCATCTGGATAAGAAATTTTGCTGCACTATTTGTGATAAAGTAGCGCTTGAAATTCACGAACATCCTCTTTTGAAAGTGATTATTTGCAGGGATTGCAATTCTTTAATTGAAGAAAAGAAACATATGAAGGATCTCCATCCTGATTGCTCTGAGTGTTATTGTGCATGGTGTGGAGGAAACAATGAATTAGTTAGCTGCAAGTCATGCAAAATGTTATTCTGCGACAACTGCATAAAGAAGAATCTTGGTACAGAACTCCTTTCTGTAGTTCAGGCCACTGGTTGGCTTTGTTATTGCTGTCGCCCAAATCTCTTGCAAAGACTCTCGTCACAACTAGAGAAAGCTATGGGATCTGTTGAAACCTCAGTTTCCAGCTCTAGTAGTGATTCAGATAATTCACAGGCAGAGATTGATGTTACAATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCTGAATTAGGAGAGGAAACAAAAAGGAAAATTGCAATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCATTGCGAGTGCAGTTTTCTGCCTCATCTAACATCATAGGCTCTTCTGGATATAATGGGAATTTATCTGAAGGCGGAAGTTCTGAAGTCCTTGGTGACGCAGTAACAGGTTATGTCGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGCCAGAATTCCTCCTAGTATATCAGCTAAACTGAAAGCGCATCAGATTGCAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAAGTCCGGGGATAAGGGTCTTGGCTGTATTCTTGCTCATACGATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAAGCACTGATCTGGGGTTAAGAACTGCACTTATTGTCACACCTGTCAATGTGCTGCACAATTGGCGGCAGGAGTTTATCAAATGGAGGCCATCAGAAGTAAAACCTCTTAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGGGCAGAAATACTTGCAAAATGGAGAAAAAAAGGTGGCATATTTCTGATTGGCTATGCTGCTTTTCGAAATCTGTCTTTTGGAAAACATGTGAAAGATAGACACACAGCCCGAGAAATTTGTCGTGCTTTACAGGATGGACCAGACATACTTGTTTGTGATGAAGCCCATATAATAAAGAATATAAAGGCTGACATAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAATCGCTTCCAGAATCCTATAGAGAATGGTCAGCATACTAATTCTACGCTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAGGGCTTTGTTCAACGAATGGACATGAATGTGGCGAAGAAGGATTTGCCTCCAAAGACTGTCTTTGTTATAAGTGTCAAGCTTTCTCCCCTACAGAGAAGACTGTACAAGAGATTCCTTGATGTGCATGGATTCACCAATGACCGGGCTTCCAATGAAAAAATGAGAAAGAGATGTTTTTTTGTAGGGTATCAAGCATTAGCTCAGATATGGAACCATCCTGGGATCTTGCAATTGACAAAAGAAGAGAAGGACTATGTAAGACAAGAAGATGCAGTTGAGAATTTTCTTGTGGATGACAGCTCTAGTGATGAAAATTCTGACTATAATGTGCCTGCTGGAGAGAAGGTTAGATGTGCAAATGAGATTCTGCAAAGGAAAGATGAGAATGGCTTTTTTCTAAAGGGTTGGTGGAATGATCTTCTGCATGAAAAAAATTATAAAGAACTTGATTACAGTGGCAAAATGGTTTTGCTCCTAGACATACTAACCATGAGTTCTGATGTTGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCAAGATTACCTAGACGAGGCAAACATGGCAAACTTTGGAAGAAGGGAAAAGACTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGTTGGTTGAGAAGTTTAATGAGCCTTCCAATAATAGAGTGAAGTGCTCTCTTATTTCGACCAGAGCTGGTTCTTTGGGCATTAATCTCCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGATTGCTGGCTCATGGAACTATGGAAGACAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTTGACAGACAGCAAGTGTACAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAAAACCCTGAGACATTGGCTGAACTGACCCAAGAGAATGGGCATTCAGTGGAGCAGACAGTACCACATTCAAATGGAACCAGCCATTCTGACAAGTTAATGGAAAGCTTACTTAGCAAGCATCGTCCAAAGTGGATTGCCAATTATCATGAACATGAATCGTTATTGCAAGAGAATGAAGAAGAAAAGCTTTCAAAAGAGGAGCAGGATATGGCTTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTGCAGAGAGTACCACTGGGGGAATCACTACCTGTTCAAAAACCACAAGAGCCAAATGCAGCACCCCCTGCACCAAAGACCCGCAGCCTCTCTCCAACAAGGTTGAGGAACAGTTTTGTAACACGCAAATGCACCAACCTTTCACACTTGCTGACACTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGTGCCCAAGAGATCAGATGGGAGGACTTGAAGAACAGAGATGGAAGAGCAGCAAGGTGA 4518 0.4172 MIAVRGRGGKITTRANQAEQSFGSQPSLFTAVKMEGKTDELEDIGSASSGSFIDDSDDGSSTSELDDKAHPEEPLTEEEIEGLIAELLEVEGKAAEAQEALEEESLNKVEIEVRQELEQTLQGNDLESAVADEMTTLKEEWEVVLDDLETESAYLLEQLDMAGVDLPRLYKWIEREAPNGCLTEAWKKRNHWVGTQASEDSAVSVADTEKYLQVCRPVRRRHGKLLEEGASGFLQKRLDESSEPVKEKTEADWDMFNKIFHDGSDADASFGSKNWASVYLASTPQQAAQMGLEFPGVNEVEEIDDIDGTSADPFIAAAIANEKEIELSDVQKRKFKKVKEEDDVIVGRKLQIHLKRRRYRKNKKQRETIESLKQKSSSVDCSNPDMEEETCDDGEKVTNNEVGCLNMKNDNIEDLGGNDDPDQVEPMNIGPLPELSKSSLSDVEQRGTKRLNDGEECNDTKKSRIVINSGDEAVAVENNIVRNTNTLDDQFEMQGTCTGIADSLPSQHLDKKFCCTICDKVALEIHEHPLLKVIICRDCNSLIEEKKHMKDLHPDCSECYCAWCGGNNELVSCKSCKMLFCDNCIKKNLGTELLSVVQATGWLCYCCRPNLLQRLSSQLEKAMGSVETSVSSSSSDSDNSQAEIDVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIIGSSGYNGNLSEGGSSEVLGDAVTGYVVNVVREKGEEAARIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSTDLGLRTALIVTPVNVLHNWRQEFIKWRPSEVKPLRVFMLEDVSRDRRAEILAKWRKKGGIFLIGYAAFRNLSFGKHVKDRHTAREICRALQDGPDILVCDEAHIIKNIKADITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVAKKDLPPKTVFVISVKLSPLQRRLYKRFLDVHGFTNDRASNEKMRKRCFFVGYQALAQIWNHPGILQLTKEEKDYVRQEDAVENFLVDDSSSDENSDYNVPAGEKVRCANEILQRKDENGFFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKHGKLWKKGKDWYRLDGRTESSERQKLVEKFNEPSNNRVKCSLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEDKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENPETLAELTQENGHSVEQTVPHSNGTSHSDKLMESLLSKHRPKWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNAAPPAPKTRSLSPTRLRNSFVTRKCTNLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKNRDGRAAR 1505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g0068 1505 Gene3D - 1012 1363 IPR027417 -
Acco02g0068 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 734 1001 IPR027417 -
Acco02g0068 1505 Coils Coil 80 114 - -
Acco02g0068 1505 MobiDBLite consensus disorder prediction 372 394 - -
Acco02g0068 1505 SMART ultradead3 743 964 IPR014001 -
Acco02g0068 1505 Gene3D - 720 1001 IPR038718 -
Acco02g0068 1505 CDD SF2_C_SNF 1144 1287 - -
Acco02g0068 1505 MobiDBLite consensus disorder prediction 1 76 - -
Acco02g0068 1505 MobiDBLite consensus disorder prediction 62 76 - -
Acco02g0068 1505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1156 1324 IPR001650 -
Acco02g0068 1505 Pfam SNF2-related domain 769 1071 IPR000330 GO:0005524|GO:0140658
Acco02g0068 1505 Coils Coil 131 151 - -
Acco02g0068 1505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 769 952 IPR014001 -
Acco02g0068 1505 SMART helicmild6 1179 1276 IPR001650 -
Acco02g0068 1505 MobiDBLite consensus disorder prediction 13 28 - -
Acco02g0068 1505 PANTHER RAD54-LIKE 61 1498 IPR044574 GO:0016887
Acco02g0068 1505 Coils Coil 1383 1403 - -
Acco02g0068 1505 MobiDBLite consensus disorder prediction 1425 1452 - -
Acco02g0068 1505 CDD ADDz_ATRX 511 609 - -
Acco02g0068 1505 Pfam Helicase conserved C-terminal domain 1152 1276 IPR001650 -
Acco02g0068 1505 ProSiteProfiles ADD domain profile. 503 635 IPR025766 -
Acco02g0068 1505 MobiDBLite consensus disorder prediction 1345 1364 - -
Acco02g0068 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g0068 Acco-ChrAcco02 597193 616335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g0068 811 1329 RAD5 or RAD16-like Gene Family AT5G22750 25.773 5.61e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco02g0068 SNF2_N 6e-49 CL0023