Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3948 ATGCCTCTTCCGGCTAAATCAATCAAGGCTGCTCAGGAAGGCGTTGGCTCCTTCAAGGATTTCGAAGATCCTGAGACCCCTTCCAACAATCTATGGATTGGCAATTTATCGCACGACGTCAGCGAGTCCGATCTTATGGCCCTCTTCGCCCAATACGGCGCACTTGATAGCGTCACGTCGTATTCCTCTCGGAGTTACGGATTCGTGTTTTTCAAGCGCGTCGAAGATGCCAAGGCTGCCAAGAATACGTTACAAGGCACTCTTCTGCGTGGGATTCCCATGAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACAACTTTGGGTGGGTGGTATTAGCCCAACTGTTACAAAGGAAGGACTGGAGGCTGAGTTTCGCAAGTTTGGTAAGATTGAGGATTTTAAGTTTGTCAGAGACCGCAACACTGCATTTGTTGAATATTTCAATCTAGATGATGCAACTCATGCCATGAAAATGATGAATGGAAAGCATATTGAGGGCGACCAAATTCGTGTAGATTTCCTTCGATCGCAATTGTCGAAAAAGGATATGTTGCTTGAGTATGGGCAGTTTCAGGGAAAAATCACTGGCCCTCCTGATTTATACTCTGGTCAGAAAAGACCACTGCAAACACAGCCTTCAGTTGGGAGGAAGGGAGATGGTCAGCCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTCTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGCACTACTCATTTGTGGAATTCAGGAGTGTGGATGAAGCTCGACGTGCCAAAGAGGGTCTTCAAGGTCGGCTTTTCAATGACCCTCGGATTACTATTATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGGCATTTTCCCTGGAAGCAAAGGAACAAAACCTGACATGTTCTTAACTGAGCAAACATTTCGACCATTACAGATGGATGTGTTTGGCCATAATCGTCCAATGGCTCCAAATAATTTTCCCAGCCAGTTAGCACCTGGTGTTATTGTTGGACCAAATGTACCATTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAACCTTTGCTTTCAGGTAGTGAGTTTAATGAACTGAGCACAAGCCAAAAGTTTCAGGATGGTATCTCCAAAAGTCAAATGGGTCCAAATTGGAAACGACCATCTCCTCCAGCACCAGGGTTGCTCCATTCTACACCGGGTATTAGACCTCCAACTCGATCCACATCTAGCGCATGGGACGTGCTTGAGATGAACCAGTTTCAGAGGGATCCTAAGCGTTCAAGGATAGATGGTGCTTTACCTATTGATGATGCCGCCTTTCCTTTAAGGAATGTTGATGATCGTGCAGTAGGGCTAGAGCAATCTTATGGGATGGAGCCAGTTATTGATGGTGGTTCTGGTCCATTTGTAAACATCCAAGGGAAGGCTATCCCTGGTCCAGTGGGCGCAAGGATCTCAACTGGAGTGCCTGCTACTGTTCAAGTTGATATTGATCACATATGGCGAGGGATAATTGCAAAAGGGGGAACACCAGTATGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGACTGAGCTTCCAGAAGTTGTTGATTGCTCCGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTGTTGGTTTTGATGTTGTCTTCTTTCTACCAGATAGTGAAGATGACTTTGCATCATACACTGAATTTCTTCGCTACCTTGGTGCAAAAAACCGTGCCGGTGTTGCCAAATTTGTTGATGGGACCACTCTATTCTTGGTGCCTCCATCTGATTTCTTAACAAAAGTTTTAAAAGTCGCAGGGCCTGAACGTCTGTATGGTGTGGTTCTTAAGTTTCCATCTATGCCAAGTGGAACATCATTGCAACAGCCATTGCCCTTGTCTGTACCTTCAACTCAGTATATTGATAGGCAGCAGGTTCCTCCTTCTCAAGTGGAATATAGTAAGATCCCTGCAAAGGAGGAAGAAATTTTGCCTATGGATTATAATAGATTGTTGCATGATGAATCTAAAGTTCCTTCAAAACCACTTTATCCAGCTTCGAGTGGCACTTCTTTAGTTCAGTCTGTACCCTCAGATTATACTTCTAGCAATACTACTGCAGCGACCCAACCTGGAGTCACATTAACACCTGAGCTCATCGCCACTCTAGCCTCTTTGCTTCCTGGAACTACACAATCATCAGCCACTGATGGTGCCAAGTCAGCAGGAGGTTCCTCAACTATGAAAGCTCCATTTCCTCCTGTTGTGCCCACTGACGCAAACCAATCTCATGTATGGAAACAGGACCATCAAATTGCAGATCCATCCAGTCATGTCCTTCAACAAGCAGCAAGTACGTACTATCAACCTTATCCACTATCATCTACTTATGGCCACCCTGGTCAAGTGGTGCCTGGCAGTTCAAATATCCAAGATTCTGCTGCTAGCTTACAGCAGCAGGTTGCCATCTCGTCTAGACCCACGACTAACTTCTCAATGCCTTCTCAAAGCGGACAAGTAACTTTATCCCTCCCAGTGAATCAACCATATCAGGTTGAAGTCTCCTCAAGCTCTCAGAAAGGCTATGGAGTGGCGCAGGGAATGGACGCCTCTGTTATATATAGTTCTCAGGCTTTTCAGAGCCCTAATATTTATGTTTCCTCAGCTAATCAAGTTCATAGCGCTAACTCTTCTCAGCAACAAACTGCTATGCCATATTCAGCAGACAAAGTGAACGCAGAGCTTCCAAATCAACAGTTTCAATCTGCTCTCCAAGGAGCTAGTCAGGGCACATCATCAGAAGTGGAGGCAGATAAAAACGAGAGGTACCAGTCAACACTACAGTTTGCCGCCAGTCTTCTCCTCCAAATACAGCAGCAGCAGCAAACCCAAGGAGGGCGTGGGACTGGAAATCAACAATGA 2988 0.4531 MPLPAKSIKAAQEGVGSFKDFEDPETPSNNLWIGNLSHDVSESDLMALFAQYGALDSVTSYSSRSYGFVFFKRVEDAKAAKNTLQGTLLRGIPMKIEFARPAKPCKQLWVGGISPTVTKEGLEAEFRKFGKIEDFKFVRDRNTAFVEYFNLDDATHAMKMMNGKHIEGDQIRVDFLRSQLSKKDMLLEYGQFQGKITGPPDLYSGQKRPLQTQPSVGRKGDGQPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGIFPGSKGTKPDMFLTEQTFRPLQMDVFGHNRPMAPNNFPSQLAPGVIVGPNVPLRPFGPQGSLEPLLSGSEFNELSTSQKFQDGISKSQMGPNWKRPSPPAPGLLHSTPGIRPPTRSTSSAWDVLEMNQFQRDPKRSRIDGALPIDDAAFPLRNVDDRAVGLEQSYGMEPVIDGGSGPFVNIQGKAIPGPVGARISTGVPATVQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAVGFDVVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPSGTSLQQPLPLSVPSTQYIDRQQVPPSQVEYSKIPAKEEEILPMDYNRLLHDESKVPSKPLYPASSGTSLVQSVPSDYTSSNTTAATQPGVTLTPELIATLASLLPGTTQSSATDGAKSAGGSSTMKAPFPPVVPTDANQSHVWKQDHQIADPSSHVLQQAASTYYQPYPLSSTYGHPGQVVPGSSNIQDSAASLQQQVAISSRPTTNFSMPSQSGQVTLSLPVNQPYQVEVSSSSQKGYGVAQGMDASVIYSSQAFQSPNIYVSSANQVHSANSSQQQTAMPYSADKVNAELPNQQFQSALQGASQGTSSEVEADKNERYQSTLQFAASLLLQIQQQQQTQGGRGTGNQQ 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3948 995 Gene3D - 104 184 IPR012677 -
Acco01g3948 995 Gene3D - 12 103 IPR012677 -
Acco01g3948 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Acco01g3948 995 MobiDBLite consensus disorder prediction 705 731 - -
Acco01g3948 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Acco01g3948 995 SMART rrm1_1 30 97 IPR000504 GO:0003723
Acco01g3948 995 SMART rrm1_1 107 174 IPR000504 GO:0003723
Acco01g3948 995 SMART rrm1_1 227 295 IPR000504 GO:0003723
Acco01g3948 995 MobiDBLite consensus disorder prediction 206 220 - -
Acco01g3948 995 MobiDBLite consensus disorder prediction 944 964 - -
Acco01g3948 995 PANTHER RNA RECOGNITION MOTIF-CONTAINING 53 979 - -
Acco01g3948 995 CDD SPOC_FPA-like 519 639 - -
Acco01g3948 995 CDD RRM_SF 108 174 - -
Acco01g3948 995 MobiDBLite consensus disorder prediction 751 773 - -
Acco01g3948 995 MobiDBLite consensus disorder prediction 198 222 - -
Acco01g3948 995 FunFam Flowering time control protein FPA 21 103 - -
Acco01g3948 995 MobiDBLite consensus disorder prediction 701 731 - -
Acco01g3948 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Acco01g3948 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Acco01g3948 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Acco01g3948 995 SUPERFAMILY RNA-binding domain, RBD 212 299 IPR035979 GO:0003676
Acco01g3948 995 MobiDBLite consensus disorder prediction 751 765 - -
Acco01g3948 995 CDD RRM_SF 31 97 - -
Acco01g3948 995 Gene3D - 215 303 IPR012677 -
Acco01g3948 995 FunFam flowering time control protein FPA 219 312 - -
Acco01g3948 995 Pfam SPOC domain 516 631 IPR012921 -
Acco01g3948 995 SUPERFAMILY RNA-binding domain, RBD 26 177 IPR035979 GO:0003676
Acco01g3948 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3948 Acco-ChrAcco01 54790536 54798138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3948 28 289 Eukaryotic Initiation Factors Gene Family AT4G34110 24.042 1.93e-12 69.3