Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3918 ATGATGAGCCACCCCCACTTCTCCAATGCCTTCAACTTTCCCTCTGCTACCAATCATAACCCGTCTTCTCTCACTTTACCCTCTCCTCCTCCAAGAGAAGCCCTACCTCTCCTTAACCTAAGCCCTCCAAGAGAGTACAAGGAAGCAGAAGGAGACATGGGATGTAGTTCTTTGAACTTACAGTTACACCTAGGCCTTCCTACCTCCTCAGACAAAGATGAAGTCCCGACCACTGTACCTTGTGGGTATCTCTCTCATAGGATCACTCCGGCCGCTCAGTACTGGATCCCTTCCCCTTCCCAGATTCTGATTGGCCCCACACACTTCTCCTGCCCTCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATATAGAAGAGGAGCGGAGTCTCTAAGGGGAACACAGCCAACGGCAATGCTGAGGCTTCCATGCTATTGTTGTGCACAAGGGTGCAAGAACAACATCGAGCATCCGAGGGCCAAGCCTCTCAAGGACTTCAGAACCCTTCAAACCCATTACAAGAGAAAGCACGGCATCAAGCCCTTCATGTGCAGAAAATGTTGCAAAGCCTTTGCCGTGAGAGGTGATTGGAGAACTCACGAGAAGAACTGTGGCAAGCTCTGGTATTGCTCCTGTGGCTCTGACTTCAAACATAAAAGATCTCTTAAAGACCATATCAAGGCTTTCGGACATGCCCACACGCATTGTGGTGTTGATAGTTGTCTCCATCATCAGGAAGTGGCCTCTGAAATTGACCACCGAAATGATTCCTTCCATTCTCATCATAGCTAG 825 0.4873 MMSHPHFSNAFNFPSATNHNPSSLTLPSPPPREALPLLNLSPPREYKEAEGDMGCSSLNLQLHLGLPTSSDKDEVPTTVPCGYLSHRITPAAQYWIPSPSQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSEYRRGAESLRGTQPTAMLRLPCYCCAQGCKNNIEHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHAHTHCGVDSCLHHQEVASEIDHRNDSFHSHHS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3918 274 PANTHER ZINC FINGER PROTEIN WIP2 14 265 IPR043584 GO:0003700|GO:0010468
Acco01g3918 274 SUPERFAMILY beta-beta-alpha zinc fingers 175 213 IPR036236 -
Acco01g3918 274 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Acco01g3918 274 SUPERFAMILY beta-beta-alpha zinc fingers 100 132 IPR036236 -
Acco01g3918 274 MobiDBLite consensus disorder prediction 1 38 - -
Acco01g3918 274 FunFam Zinc finger protein WIP2 162 244 - -
Acco01g3918 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Acco01g3918 274 SMART c2h2final6 193 213 IPR013087 -
Acco01g3918 274 SMART c2h2final6 109 131 IPR013087 -
Acco01g3918 274 SMART c2h2final6 219 242 IPR013087 -
Acco01g3918 274 SMART c2h2final6 156 188 IPR013087 -
Acco01g3918 274 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3918 Acco-ChrAcco01 54593888 54595506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3918 6 251 C2H2 Transcription Factor Family AT1G51220 59.441 7.66e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g3918 None None None