Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3909 ATGTGGGACTCATTACAAAATGCTGCCTTGCTAAGGTGTGGCAAAAGTTGTGGCCTTCGCTGGATCAATTATTTGAGGCCTCACCTTAAACGAGGCGCTTTCTCACCCCAAGAGCAACAACTCATCATCCATTTGCACTCTTTTCTTGGCAACAGATGGTCTCAAATAGCGGCACGCTTGCCAGGGCGAACGGACAACGAAATCAAGAATTTTTGGAATTCCAAAATGAAAAAAAGAGTCAAGAACTGTTTGGCCCCGAAAGAGGCGGATAAGAGAGGGTTCGTTTCAGCGCAAGATCATGATGGTTTTAATGTACCTATGTTGATCCCGTCTGCATCTTCATGCACAGTTGAGCAAGGTGGGTTACTCTCAGGAAGTCAAGTGGATGATGGAATATCAGAAAGGCCTCCAGACCTCAAAGAGGAGAGCACGTGCCACGGACACACTGCCAATGCTTATTTGGAAGACGTAAACAACACTAGTATGGTTAATAGCTGCAGAAGCAACAGTAACAAGAGACCTCATCAGGCGGATAATTTATTTGACGAACAAGAGTTAATCATGGGCATGGGACTGGGAGAGTGGAATCTGGAGGATCTCATGAAGGATATTCCCTCCTCTTCCTTCCTTGATTTTCTTGATCATCAACTCTGCTTCTTTTAA 663 0.4495 MWDSLQNAALLRCGKSCGLRWINYLRPHLKRGAFSPQEQQLIIHLHSFLGNRWSQIAARLPGRTDNEIKNFWNSKMKKRVKNCLAPKEADKRGFVSAQDHDGFNVPMLIPSASSCTVEQGGLLSGSQVDDGISERPPDLKEESTCHGHTANAYLEDVNNTSMVNSCRSNSNKRPHQADNLFDEQELIMGMGLGEWNLEDLMKDIPSSSFLDFLDHQLCFF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3909 220 Pfam Myb-like DNA-binding domain 31 73 IPR001005 -
Acco01g3909 220 ProSiteProfiles Myb-like domain profile. 26 76 IPR001005 -
Acco01g3909 220 CDD SANT 33 73 IPR001005 -
Acco01g3909 220 SMART sant 30 78 IPR001005 -
Acco01g3909 220 PANTHER MYB DOMAIN PROTEIN 55 6 124 - -
Acco01g3909 220 Gene3D - 33 95 - -
Acco01g3909 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 80 IPR017930 -
Acco01g3909 220 SUPERFAMILY Homeodomain-like 12 83 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3909 Acco-ChrAcco01 54511418 54512746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3909 3 81 MYB Transcription Factor Family AT3G08500 81.013 6.51e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco01g3909 Myb_DNA-binding 4e-13 CL0123