Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3896 ATGCCGACGATTGAGATAGGGGAGGATCATGTGACTACGGATGCACACTGTGCCATTTGTAAAGAAGCGTTTGAGGGAGGTTCAGAGGCACGCGAGATGCCCTGCAAGCACATTTACCACTCGGACTGCATCGTTCCGTGGCTTTCAAGGTGCAATTCATGTCCTGTGTGTCGCAACAAGCTGCCTTCCGACGGAAACCATGAGGAAAGTAGAATGTCGGGGCTGATCGACGAAGAAACAATAGGATTAACAATATGGAGACTGCCAGGCGGAGACTTGGCCGTAGGAAGGTTTCCCAACTATCGGGGTGATGGGCAGAGTCATTCGCCAGTTGTATACACAGAAATGGATGCTGTTAATGGCCTTCCTAGAAGAGTTTCCCGAGCGATGAGAAGTGTTAGACTTGGCCAAAATCGTGGATTGAGCAGGATGTTTCGCAATTTCTTGGCATTCTTCCGCAGTCTTGGGTGTAGGTCAACTTCATCCTCCTCTTCCCGTTCCGTTTCTCTGAATGGGCCCATGAGCAGGGTAGAAGCCTCAGGCCACTGA 549 0.5064 MPTIEIGEDHVTTDAHCAICKEAFEGGSEAREMPCKHIYHSDCIVPWLSRCNSCPVCRNKLPSDGNHEESRMSGLIDEETIGLTIWRLPGGDLAVGRFPNYRGDGQSHSPVVYTEMDAVNGLPRRVSRAMRSVRLGQNRGLSRMFRNFLAFFRSLGCRSTSSSSSRSVSLNGPMSRVEASGH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3896 182 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
Acco01g3896 182 SUPERFAMILY RING/U-box 6 64 - -
Acco01g3896 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Acco01g3896 182 MobiDBLite consensus disorder prediction 158 174 - -
Acco01g3896 182 Pfam Ring finger domain 16 58 IPR001841 -
Acco01g3896 182 SMART ring_2 17 57 IPR001841 -
Acco01g3896 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 62 - -
Acco01g3896 182 Pfam Protein of unknown function (DUF1117) 81 167 IPR010543 -
Acco01g3896 182 MobiDBLite consensus disorder prediction 158 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3896 Acco-ChrAcco01 54456365 54456913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3896 1 75 C3H Transcription Factor Family AT5G01980 48.684 1.21e-19 83.6