Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3853 ATGGAGAGAGCAAGAGATGAAGGTGAGTCAGAGGGCTTAAACATGGTTAAGTGTTTGATGTTGCTGTCCAGAGTTGGGGTGACCAACCATTCCTCACAGTGTAGTGGTGGTTTTAAGTGCAAGACTTGTAACAGAGTATTTCCTTCTTTTCAAGCTCTTGGAGGGCACCGAGCCAGCCACAAGAGGCCCAAGCTCATGCTTTCTTCCTCACATGATCTGCCTGTGAAGAAGCTCAACAAGACTCACCCATGCGCCGTTTGCGGACTCGAGTTTGGAATCGGACAAGCCCTCGGAGGTCACATGAGAAAGCATAGAACTACTACTTCTGTTAATAAGCATAATAACTTTGATTCATGCTTGGACTTGAACTTGACGCCGTTAGAAAATGATGATCTCAACCTCCACTTGAGGACGCCTCTTGTTTAA 426 0.4624 MERARDEGESEGLNMVKCLMLLSRVGVTNHSSQCSGGFKCKTCNRVFPSFQALGGHRASHKRPKLMLSSSHDLPVKKLNKTHPCAVCGLEFGIGQALGGHMRKHRTTTSVNKHNNFDSCLDLNLTPLENDDLNLHLRTPLV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3853 141 PANTHER ZINC FINGER PROTEIN ZAT5 9 129 - -
Acco01g3853 141 Gene3D Classic Zinc Finger 35 104 - -
Acco01g3853 141 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Acco01g3853 141 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Acco01g3853 141 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Acco01g3853 141 Pfam C2H2-type zinc finger 38 63 - -
Acco01g3853 141 Pfam C2H2-type zinc finger 82 106 - -
Acco01g3853 141 SUPERFAMILY beta-beta-alpha zinc fingers 38 104 IPR036236 -
Acco01g3853 141 SMART c2h2final6 38 60 IPR013087 -
Acco01g3853 141 SMART c2h2final6 82 104 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3853 Acco-ChrAcco01 54249698 54250123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3853 1 130 C2H2 Transcription Factor Family AT3G53600 45.513 1.33e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g3853 zf-C2H2_6 2e-08 CL0361