Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3851 ATGGTTCAACAGGAATTCCGGAAAGGTCCATGGACAGAACAGGAGGACATCAAATTGGTCTCCTTTGTTGGTTTATTCGGAGACCGGAGATGGGATTTTATAGCCAAAGTTTCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACTTGCATCCTGGTCTCAAAAGGGGCAAGATGACGCCCCAAGAAGAGCGCCTCGTGCTGGAGCTTCACGCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGGAAATTGCCAGGGCGCACAGATAATGAGATTAAGAATTACTGGAGGACTTACATGAGGAAGAAGGCCCAGGAGACAAAGCGGGCGGCCACTCCATCATCAATATCAAGTTGTCATTCTTCACTATCATCAAACAATCAAGCGGTGGGTTCACATCCTTCCAAGGAGAGTGGACATCCTTCCAAGGAGAGTGGAGAAGAAAGCTTTTATGACACAGGAGGGCCAAATATGATTGACTCCACAGAAATCAAGATAGGGAAAGAACAAGGTGAACAGGGGTACTCCATGGATGACATATGGAAGGATATTGCTCTGTCAGAAGAGAATGTTCAGAATCCAGTCCATGCTAGTGTTAGGCATATCGAAGAGGAGTGCAGCTTCTTTGGTCCTCATCTGCCATCTCCTTCTTGGGAGTATTCTTCAGACTCGCTGTGGGTTATGGATGAAGAAGGTAAGACGTTTCTCCCTTCAAGTGACCAATTCTTTTCCAGTTTTGAACAAGGGGCAGCAACAGCATTTAAGTCTATGAGAACATCGTGCACTCAACAGCTCGGAATGGTTTTGTTGCCAATAGCCTGCTTCGTGAGAGATCTATGTACTGGTCATCAAGTCACCAGTTGCGCGGGCTACAATGCATTCAAAGGTCGGGCTACTGTGCACAGGCTATTCTATCAAGCCATGAAAACTCTTCCTATTGCCTTTACAGTTCCAGACCAGACCTAG 984 0.4614 MVQQEFRKGPWTEQEDIKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTYMRKKAQETKRAATPSSISSCHSSLSSNNQAVGSHPSKESGHPSKESGEESFYDTGGPNMIDSTEIKIGKEQGEQGYSMDDIWKDIALSEENVQNPVHASVRHIEEECSFFGPHLPSPSWEYSSDSLWVMDEEGKTFLPSSDQFFSSFEQGAATAFKSMRTSCTQQLGMVLLPIACFVRDLCTGHQVTSCAGYNAFKGRATVHRLFYQAMKTLPIAFTVPDQT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3851 327 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Acco01g3851 327 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Acco01g3851 327 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Acco01g3851 327 MobiDBLite consensus disorder prediction 112 167 - -
Acco01g3851 327 Gene3D - 64 109 - -
Acco01g3851 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Acco01g3851 327 FunFam Myb transcription factor 8 60 - -
Acco01g3851 327 SMART sant 7 57 IPR001005 -
Acco01g3851 327 SMART sant 60 108 IPR001005 -
Acco01g3851 327 Gene3D - 8 60 - -
Acco01g3851 327 CDD SANT 63 106 IPR001005 -
Acco01g3851 327 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Acco01g3851 327 FunFam MYB transcription factor 63 130 - -
Acco01g3851 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Acco01g3851 327 CDD SANT 10 55 IPR001005 -
Acco01g3851 327 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Acco01g3851 327 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 166 IPR044676 GO:0003700|GO:0006355|GO:0043565
Acco01g3851 327 MobiDBLite consensus disorder prediction 115 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3851 Acco-ChrAcco01 54230396 54232606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3851 1 257 MYB Transcription Factor Family AT5G59780 59.302 3.83e-93 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g3851 Myb_DNA-binding 1e-14 CL0123