Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3850 ATGCCGATTTCAAGAATTGCGATCGGAGACGCGTCTGAGTTTAGTCAGGCCGATGCTCTAAAGGCAGCCTTGGCCGAGTTCATCTCGATGCTCATCTTTGTCTTTGCTGGCGAAGGCTCCGGCATGGCTTACAATAAACTCACAAACAATGGTGCAGCAACACCAGCAGGGCTGGTGTCAGCATCAATAGCCCATGCCCTAGCACTGTTCGTGGCGGTCTCTGTTGGCGCCAACATTTCTGGTGGTCACGTGAATCCTGCTGTTACCTTCGGTGCTTTTGTTGGTGGCCACATTAGCCTCCTTAGAAGCATTCTGTACTGGATCGCTCAGTTGCTAGGTTCTGTGGTTGCTTGCTTGCTACTTAAATTTGCCACTGGTGGACTGGAAACATCGGCATTTGCACTGTCTGCAGGGGTGGGAGCATGGAACGCAGTGGTATTTGAGATAGTGATGACTTTTGGTTTGGTGTACACAGTGTATGCAACAGCAGTGGACCCAAAGAAGGGAGACATAGGCATAATAGCCCCAATTGCTATTGGTTTCATAGTGGGTGCCAACATCCTGGCTGGTGGTGCCTTTGATGGTGCGTCTATGAACCCAGCTGTGTCGTTTGGACCAGCCGTGGTTAGCTGGACTTGGGCTAACCACTGGGTCTATTGGCTTGGTCCATTCGTTGGAGCCGGTATTGCTGCCCTTGTCTATGAGATTTTCTTCATCAACCAGAACTCTCGTGAACCACTACCCACCACTGACTATTAA 759 0.5046 MPISRIAIGDASEFSQADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGAATPAGLVSASIAHALALFVAVSVGANISGGHVNPAVTFGAFVGGHISLLRSILYWIAQLLGSVVACLLLKFATGGLETSAFALSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWLGPFVGAGIAALVYEIFFINQNSREPLPTTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3850 252 PANTHER AQUAPORIN-8 6 245 IPR034294 -
Acco01g3850 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Acco01g3850 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco01g3850 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco01g3850 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco01g3850 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco01g3850 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco01g3850 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco01g3850 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Acco01g3850 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Acco01g3850 252 SUPERFAMILY Aquaporin-like 17 244 IPR023271 -
Acco01g3850 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Acco01g3850 252 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3850 Acco-ChrAcco01 54226193 54227154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3850 1 252 Major Intrinsic Protein MIP AT4G01470 78.571 6.25e-144 401
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3850 01 54226193 54227154 Acco08g0197 08 1344953 1347564 CCT